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. Author manuscript; available in PMC: 2024 Jun 1.
Published in final edited form as: Neuroimage. 2024 Apr 20;293:120622. doi: 10.1016/j.neuroimage.2024.120622

Table 2.

Toolboxes for Imaging Transcriptomics Analysis.

Resources (Citation) Language Access Null model types Test statistics
GAMBA (Wei, et al., 2022) MATLAB https://github.com/dutchconnectomelab/GAMBA-MATLAB competitive, self-contained, coexpression-matched competitive, brain-specific competitive N/A
ABAnnotate Toolbox MATLAB https://github.com/LeonDLotter/ABAnnotate self-contained Multiple (e.g., Mean, Meanabs, Median, etc.)
GCEA (Fulcher, et al., 2021) MATLAB https://github.com/benfulcher/GeneCategoryEnrichmentAnalysis competitive, self-contained Single (Mean)
Imaging Transcriptomics Toolbox (Giacomel, et al., 2022) Python https://github.com/alegiac95/Imaging-transcriptomics self-contained Single (Weighted KS)
Virtual histology (Shin, et al., 2018) R SI of the paper (https://doi.org/10.1093/cercor/bhx197) competitive Single (Mean)