Table 3.
Molecular docking reports of the synthesized sulfonamide derivatives (8a-c, 11a-c, and 16a-c) with bacterial protein tyrosyl-tRNA synthetase (PDB ID: 1JIJ).
| Protein (PDB ID) | Compound | Docking score (kcal/mol) | Ligand | Receptor | Type of interaction | Distance | E (kcal/mol) |
|---|---|---|---|---|---|---|---|
| 1JIJ | 8a | −8.15 | N 26 | SG CYS 37 | H-donor | 3.93 | −1.4 |
| 5-ring | CB ASP 195 | pi-H | 4.54 | −0.5 | |||
| 8b | −8.72 | S 24 | OD2 ASP 195 | H-donor | 3.64 | −1.0 | |
| N 26 | SG CYS 37 | H-donor | 3.83 | −0.9 | |||
| O 12 | NZ LYS 84 | H-acceptor | 2.98 | −6.9 | |||
| 5-ring | CG PRO 53 | pi-H | 4.33 | −0.9 | |||
| 5-ring | 5-ring HIS 47 | pi-pi | 3.91 | −0.0 | |||
| 8c | −8.30 | S 24 | OD2 ASP 80 | H-donor | 4.00 | −0.6 | |
| S 24 | OD1 ASP 195 | H-donor | 3.95 | −3.0 | |||
| N 26 | N ASP 40 | H-acceptor | 3.18 | −4.1 | |||
| 11a | −10.65 | N 14 | OE2 GLU 86 | H-donor | 3.16 | −1.1 | |
| O 13 | N SER 85 | H-acceptor | 3.22 | −1.7 | |||
| N 70 | NZ LYS 84 | H-acceptor | 2.75 | −8.2 | |||
| 6-ring | CA LYS 84 | pi-H | 4.46 | −0.7 | |||
| 6-ring | CB LYS 231 | pi-H | 3.95 | −1.0 | |||
| 11b | −10.44 | S 24 | OD1 ASP 195 | H-donor | 4.06 | −0.8 | |
| N 17 | OH TYR 36 | H-acceptor | 2.83 | −1.4 | |||
| 5-ring | CG GLN 174 | pi-H | 4.25 | −1.1 | |||
| 11c | −10.25 | O 13 | NE2 GLN 95 | H-acceptor | 3.27 | −1.7 | |
| N 100 | OH TYR 36 | H-acceptor | 2.82 | −1.6 | |||
| 6-ring | CE LYS 84 | pi-H | 4.64 | −0.7 | |||
| 5-ring | CG GLN 174 | pi-H | 4.25 | −1.1 | |||
| 16a | −6.96 | N 14 | OD2 ASP 195 | H-donor | 3.06 | −6.4 | |
| N 32 | OH TYR 36 | H-acceptor | 2.78 | −1.6 | |||
| 5-ring | CG GLN 174 | pi-H | 3.86 | −0.7 | |||
| 16b | −7.19 | N 14 | OE1 GLN 174 | H-donor | 2.74 | −0.5 | |
| O 13 | N GLY 38 | H-acceptor | 2.54 | −1.7 | |||
| 5-ring | CE1 HIS 47 | pi-H | 4.10 | −0.8 | |||
| 5-ring | CG GLN 174 | pi-H | 3.71 | −0.7 | |||
| 16c | −7.19 | N 14 | OD1 ASP 195 | H-donor | 3.13 | −4.2 | |
| S 25 | OD1 ASP 40 | H-donor | 3.69 | −0.5 | |||
| S 25 | OD2 ASP 40 | H-donor | 3.43 | −1.5 | |||
| O 12 | N GLY 193 | H-acceptor | 3.17 | −1.3 | |||
| N 24 | N ASP 40 | H-acceptor | 2.69 | −2.5 |