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. 2024 May 10;10(10):e31082. doi: 10.1016/j.heliyon.2024.e31082

Table 3.

Molecular docking reports of the synthesized sulfonamide derivatives (8a-c, 11a-c, and 16a-c) with bacterial protein tyrosyl-tRNA synthetase (PDB ID: 1JIJ).

Protein (PDB ID) Compound Docking score (kcal/mol) Ligand Receptor Type of interaction Distance E (kcal/mol)
1JIJ 8a −8.15 N 26 SG CYS 37 H-donor 3.93 −1.4
5-ring CB ASP 195 pi-H 4.54 −0.5
8b −8.72 S 24 OD2 ASP 195 H-donor 3.64 −1.0
N 26 SG CYS 37 H-donor 3.83 −0.9
O 12 NZ LYS 84 H-acceptor 2.98 −6.9
5-ring CG PRO 53 pi-H 4.33 −0.9
5-ring 5-ring HIS 47 pi-pi 3.91 −0.0
8c −8.30 S 24 OD2 ASP 80 H-donor 4.00 −0.6
S 24 OD1 ASP 195 H-donor 3.95 −3.0
N 26 N ASP 40 H-acceptor 3.18 −4.1
11a −10.65 N 14 OE2 GLU 86 H-donor 3.16 −1.1
O 13 N SER 85 H-acceptor 3.22 −1.7
N 70 NZ LYS 84 H-acceptor 2.75 −8.2
6-ring CA LYS 84 pi-H 4.46 −0.7
6-ring CB LYS 231 pi-H 3.95 −1.0
11b −10.44 S 24 OD1 ASP 195 H-donor 4.06 −0.8
N 17 OH TYR 36 H-acceptor 2.83 −1.4
5-ring CG GLN 174 pi-H 4.25 −1.1
11c −10.25 O 13 NE2 GLN 95 H-acceptor 3.27 −1.7
N 100 OH TYR 36 H-acceptor 2.82 −1.6
6-ring CE LYS 84 pi-H 4.64 −0.7
5-ring CG GLN 174 pi-H 4.25 −1.1
16a −6.96 N 14 OD2 ASP 195 H-donor 3.06 −6.4
N 32 OH TYR 36 H-acceptor 2.78 −1.6
5-ring CG GLN 174 pi-H 3.86 −0.7
16b −7.19 N 14 OE1 GLN 174 H-donor 2.74 −0.5
O 13 N GLY 38 H-acceptor 2.54 −1.7
5-ring CE1 HIS 47 pi-H 4.10 −0.8
5-ring CG GLN 174 pi-H 3.71 −0.7
16c −7.19 N 14 OD1 ASP 195 H-donor 3.13 −4.2
S 25 OD1 ASP 40 H-donor 3.69 −0.5
S 25 OD2 ASP 40 H-donor 3.43 −1.5
O 12 N GLY 193 H-acceptor 3.17 −1.3
N 24 N ASP 40 H-acceptor 2.69 −2.5