Table 3.

SatDNAs present in all six oyster species, adapted from Supplementary file 3

satDNA	Cl	RE classification	Total reads	Cvi reads	Can reads	Cgi reads	Oed reads	Car reads	Cho reads	Cvi	Can	Cgi	Oed	Car	Cho
OYS1	1	satDNA	60,379	0	16,851	15,571	64	14,171	13,722	CvA	CanSat01	CgiSat01	OedSat01	CarSat01	ChoSat01
	2	Unclassified	43,759	19,067	3243	2677	8667	4642	5463
	6	satDNA	27,736	6	5	2	27,682	11	30
	19	Unclassified	16,430	0	3530	2942	5	5134	4819
OYS2	12	satDNA	19,886	0	4097	4546	0	5659	5584	CviSat08	CanSat02	CgiSat02	OedSat05	CarSat02	ChoSat03
	15	satDNA	18,740	2	4457	3679	1	3809	6792
	16	satDNA	17,209	1	2342	2305	0	7373	5188
	22	satDNA	14,946	14,941	2	0	3	0	0
	60	satDNA	8477	1555	0	0	6922	0	0
	191	satDNA	3258	2185	0	0	1073	0	0
	377	satDNA	1567	1567	0	0	0	0	0
OYS3	4	Unclassified	40,667	893	6425	6292	593	13,276	13,188	CviSat10	CanSat08	CgiSat05	OedSat05	CarSat04	ChoSat05
OYS4	85	satDNA	6376	101	547	779	3860	471	618	CviSat22	CanSat30	CgiSat16	OedSat10	CarSat36	ChoSat23
OYS5	148	satDNA	4226	512	613	578	1213	702	608	CviSat03	CanSat29	CgiSat52	OedSat29	CarSat29	ChoSat34
OYS6	30	satDNA	12,667	5915	1035	1138	56	1262	3261	CviSat09	CanSat20	CgiSat14	OedSat51	CarSat22	ChoSat12
	166	Unclassified	3882	0	0	0	3882	0	0
OSY7	88	Unclassified	6288	1071	1280	863	1104	1233	737					CarSat12	ChoSat19
	91	Unclassified	6059	0	2847	1403	0	1131	678
OYS8	55	Unclassified	8762	202	1746	1505	803	2102	2404	CviSat29	CanSat18	CgiSat38	OedSat40
OYS9	62	Unclassified	8253	2237	1693	1163	575	1073	1512		CanSat15
OYS10	87	Unclassified	6297	4358	237	181	902	284	335	CviSat32
OYS11	389	satDNA	1488	525	173	236	276	48	230	CviSat20	CanSat51	CgiSat26			ChoSat48
OYS12	453	Unclassified	1124	391	187	278	44	78	146		CanSat59
OYS13	515	satDNA	888	96	175	176	65	165	211		CanSat53	CgiSat27		CarSat46	ChoSat43

Listed are: cluster number in comparative clustering, RepeatExplorer2 classification of the cluster, total number of reads in the cluster, the number of reads contributed by each species, correspondence to a specific satDNA detected during the individual clustering