Table 6.

Results for entity recognition using our best performing model (SciBERT uncased) in P, R, and F1-score

Entity	P	R	F1
Other	0.93	0.91	0.92
Age Group	1.00	0.97	0.98
Finding	0.85	0.88	0.86
Location	0.74	0.80	0.77
No Symptom Occurrence	0.79	0.72	0.75
Population Group	0.88	0.95	0.91
Sign or Symptom	0.83	0.82	0.82
Temporal Concept	0.78	0.87	0.82
Weighted avg	0.89	0.89	0.89
Macro avg	0.85	0.86	0.86