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[Preprint]. 2024 May 25:2024.03.31.587283. [Version 2] doi: 10.1101/2024.03.31.587283

Figure 14: Multi-graph tensor representation of RNA conformational ensembles,

Figure 14:

and the associated symmetry groups acting on each axis. We process a set of k RNA backbone conformations with n nodes each into a tensor representation. Each multi-state GNN layer updates the tensor while being equivariant to the underlying symmetries; pseudocode is available in Listing 1. Here, we show a tensor of 3D vector-type features with shape n×k×3. As depicted in the equivariance diagram, the updated tensor must be equivariant to permutation Sn of n nodes for axis 1, permutation Sk of k conformers for axis 2, and rotation SO(3)/O(3) of the 3D features for axis 3.