Key resources table.
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| Fluoroshield with DAPI | Sigma-Aldrich | SKU: F6057 |
| Calbindin-D28K Monoclonal Antibody | Proteintech | Cat# 66394–1-Ig |
| Bacterial and virus strains | ||
| AAV5-CaMKIIa- hChR2-EYFP | UNC Vector Core | NA |
| Biological samples | ||
| Chemicals, peptides, and recombinant proteins | ||
| Cholera Toxin Subunit B, Alexa Fluor™ 488 Conjugate | Invitrogen | Cat# C22841 |
| Cholera Toxin Subunit B, Alexa Fluor™ 594 Conjugate | Invitrogen | Cat# C22842 |
| Cholera Toxin Subunit B, Alexa Fluor™ 647 Conjugate | Invitrogen | Cat# C34778 |
| Critical commercial assays | ||
| Deposited data | ||
| Hippocampal data | http://crcns.org/data-sets/hc/hc-3 | http://dx.doi.org/10.6080/K09G5JRZ |
| Hippocampal and prefrontal data | http://crcns.org/data-sets/pfc/pfc-2 | http://dx.doi.org/10.6080/K01V5BWK |
| Hippocampal data | https://crcns.org/data-sets/hc/hc-11 | http://dx.doi.org/10.6080/K0862DC5 |
| Hippocampal data | https://crcns.org/data-sets/hc/hc-14 | http://dx.doi.org/10.6080/K0MS3QXD |
| Experimental models: Cell lines | ||
| Experimental models: Organisms/strains | ||
| Rat: Long-Evans | Charles River | Cat#: Crl:LE 006 |
| Oligonucleotides | ||
| Recombinant DNA | ||
| Software and algorithms | ||
| Analysis tools | https://github.com/ayalab1/neurocode | https://zenodo.org/badge/latestdoi/398122107 |
| Analysis tools | https://github.com/ryanharvey1/ripple_heterogeneity | https://zenodo.org/badge/latestdoi/388846280 |
| MATLAB | MathWorks | https://www.mathworks.com/products/matlab.html |
| Python | Python Software Foundation | https://www.python.org/ |
| R | R Foundation for Statistical Computing | https://www.R-project.org/ ; RRID: SCR_001905 |
| RStudio | RStudio, PBC | https://www.rstudio.com/ ; RRID: SCR_00043 |
| Vscode | Microsoft | https://code.visualstudio.com/ |
| Cell Explorer | https://cellexplorer.org/ | https://doi.org/10.1016/j.neuron.2021.09.002 |
| Nelpy | https://github.com/nelpy/nelpy | https://zenodo.org/badge/latestdoi/77548623 |
| Seaborn | https://seaborn.pydata.org/ | https://doi.org/10.21105/joss.03021 |
| Scikit-learn | https://scikit-learn.org/stable/ | https://zenodo.org/badge/latestdoi/21369/scikit-learn/scikit-learn |
| Matplotlib | https://matplotlib.org/ | 10.1109/MCSE.2007.55 |
| Numpy | https://numpy.org/ | 10.1038/s41586-020-2649-2 |
| Other | ||
| Silicon probes | Neuronexus | https://neuronexus.com/ |
| Intan RHD2000 | Intan technologies | http://intantech.com/files/Intan_RHD2000_eval_system.pdf |