Appendix 1—table 2. Gene expression sources.
| Application | User-provided data | GEO microarray | GEO RNA-seq |
|---|---|---|---|
| Gene pattern Reich et al., 2006 | + | + | - |
| GEO2R Barrett et al., 2013 | - | + | - |
| BicOverlapper2 Santamaría et al., 2014 | + | + | - |
| Babelomics Alonso et al., 2015 | + | - | - |
| Morpheus Gould, 2016 | + | - | - |
| START Nelson et al., 2017 | + | - | - |
| BioJupies Torre et al., 2018 | + | - | +/- * |
| iDEP Ge et al., 2018 | + | - | +/-* |
| Degust Powell, 2019 | + | - | - |
| EXPANDER Hait et al., 2019 | + | - | - |
| GREIN Mahi et al., 2019 | - | - | + |
| RaNa-seq Prieto and Barrios, 2019 | + | - | + |
| RNAdetector La Ferlita et al., 2021 | + | - | - |
| GEOexplorer Hunt et al., 2022 | - | + | - |
| Phantasus | + | + | +/-* |
*
As processed in ARCHs4 and/or Dee2 projects.