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. 2024 Apr 26;5(5):101535. doi: 10.1016/j.xcrm.2024.101535
REAGENT or RESOURCE SOURCE IDENTIFIER
Critical commercial assays

Chromium Single Cell 30 Reagent Kits 10X Genomics N/A

Deposited data

scRNA-seq data Patil et al.20 https://hpap.pmacs.upenn.edu/

Software and algorithms

Cell Ranger v3.0.1 10X Genomics https://www.10xgenomics.com/support/software/cell-ranger/latest
R R Development Core Team, 2008 https://www.r-project.org/
R Studio N/A https://www.rstudio.com/
xgboost v1.5.0.2 Chen et al.19 https://cran.r-project.org/web/packages/xgboost/index.html
scSorter v0.0.2 Guo et al.22 https://cran.r-project.org/web/packages/scSorter/vignettes/scSorter.html
Seurat v4.1.0 Hao et al.58 https://satijalab.org/seurat/
scDblFinder v1.8.0 Germain et al.59 https://bioconductor.org/packages/release/bioc/html/scDblFinder.html
SingleCellExperiment v1.16.0 Amezquita et al.60 https://bioconductor.org/packages/release/bioc/html/SingleCellExperiment.html
sctransform v0.3.3 Hafemeister et al.61 https://satijalab.org/seurat/articles/sctransform_vignette.html
This study Patil et al.20 https://github.com/AbhijeetRPatil/ML_Islets)