Biological samples |
|
SLE and control plasma or serum samples |
Patients and healthy control subjects |
N/A |
|
Critica commercia assays |
|
HEK-BlueTM IFN-α/β cells |
InvivoGen |
Cat# hkb-ifnab; RRID: CVCL_KT26 |
HEK-Blue™ IFN-γ cells |
InvivoGen |
Cat# hkb-ifng; RRID: CVCL_UF30 |
HEK-Blue™ IFN-λ cells |
InvivoGen |
Cat# hkb-ifnl |
QUANTI-Blue™ |
InvivoGen |
Cat# rep-qb1 |
IFN-α6 |
PBL |
Cat# 11165 |
IFN-γ |
PeproTech |
Cat# 300-02 |
IFN-λ3 (IL-28B) |
Gibco |
Cat# PHC0894 |
|
Deposited data |
|
Whole blood gene expression data by microarray |
Gene expression Omnibus |
GSE45291; GSE121239
|
|
Softwareand algorithms
|
|
Oligo |
https://bioconductor.org/packages/release/bioc/html/oligo.html |
Ver. 1.6.6 |
Genefilter |
https://bioconductor.org/packages/release/bioc/html/genefilter.html |
Ver. 1.84 |
Limma |
https://bioconductor.org/packages/release/bioc/html/limma.html |
Ver. 3.58.1 |
Metascape.org |
https://metascape.org/ |
v3.5.20240101 |
Complexheatmap |
https://bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html |
Ver. 2.19.0 |
WGCNA |
https://cran.r-project.org/web/packages/WGCNA/index.html |
Ver. 1.72–5 |
Cytoscape |
https://cytoscape.org/ |
Ver. 3.10.2 |
STRING |
https://apps.cytoscape.org/apps/stringapp |
Ver. 2.0.3 |
rptR |
https://github.com/mastoffel/rptR |
Ver.0.9.1 |
Brms |
https://github.com/paul-buerkner/brms/ |
Ver.2.21.0 |
Lme4 |
https://github.com/lme4/lme4 |
Ver. 1.1–14 |
nnet |
https://cran.r-project.org/web/packages/nnet/index.html |
Ver. 7.3–19 |