Table 1.
Abundance, percentage, and characteristic spike gene mutations of each early lineage/VOI/VOC detected
| VOC/VOI | Week of detection | Count [n] | Percentage [%] | Characteristic spike gene mutations |
|---|---|---|---|---|
| Early lineages | 2020_10 | 3263 | 7.8 | D614G, S477N, A222V |
| B.1.258.17 | 2020_35 | 3651 | 8.8 | L189F, N439K, D614G, H69_V70del |
| Alpha | 2021_1 | 3912 | 9.4 | N501Y, A570D, D614G, P681H, T716I, S982A, D1118, H69_V70del, Y145del |
| Beta | 2021_6 | 22 | 0.05 | D80A, D215G, K417N, E484K, N501Y, D614G, A701V |
| Eta | 2021_3 | 29 | 0.07 | Q52R, A67V, E484K, D614G, Q677H, F888L |
| Gamma | 2021_22 | 3 | 0.007 | L18F, T20N, P26S, D138Y, R190S, K417T, E484K, N501Y, D614G, H655Y, T1027I, V1176F |
| Delta | 2021_16 | 13 184 | 31.7 | T19R, G142D, R158G, L452R, T478K, D614G, P681R, D950N |
| Omicron | 2021_48 | 17 473 | 42.1 | T19I, L24S, G124D, V213G, G339, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, H69_V70del |