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. 2024 May 22;9(22):23634–23648. doi: 10.1021/acsomega.4c01219

Table 1. Interacting Residues Involved in Interactions of CYP’s Enzymes and Potential Inhibitorsa.

enzyme inhibitor H-bonds hydrophobic π-cation π–π stacking salt bridges XP GScore(kcal/mol) ΔGbind(kcal/mol)
CYP2D6 RTZ   LEU110, PHE120, ALA209, LEU213, GLN244, PHE247, ILE297, ALA300, VAL308, PHE483, LEU484     GLU216, ASP301 –7.07 –72.57
M30   LEU213, GLU216, THR309, VAL370, VAL374       –6.20 –73.78
M35 SER304 PHE120, ASP301, ALA305, THR309, VAL370, VAL374       –6.02 –65.40
M37   PHE120, LEU213, VAL374, PHE483       –7.27 –85.15
M38   PHE120, LEU213, VAL374, PHE483       –7.48 –83.12
M39 GLN244 PHE120, GLN244, ALA300     ASP301 –7.12 –67.86
M44 SER304 PHE120, LEU213, GLU216, VAL374, PHE483       –6.69 –64.36
CYP3A4 RIT SER119, ARG372, LEU483 PHE57, ARG106, PHE108, ILE120, LEU210, PHE213, PHE215, THR224, PHE241, ILE301, PHE304, ILE369, LEU373   PHE213   –10.03 –62.42
M33 SER119, THR309 ILE120, PHE241, ILE301       –6.94 –60.45
M38 THR309 PHE108 ARG105     –6.49 –70.96
M39   ILE301, PHE304       –6.93 –65.95
M40 ILE369, MET371, ARG372, LEU483 ILE369, LEU482       –8.81 –66.66
M41 ILE369, MET371, ARG372, GLY481, LEU483 PHE304, ILE369, LEU482       –8.34 –73.48
M42 THR309, ILE369, LEU483 ILE369, LEU482       –10.15 –65.89
a

Thioridazine (RTZ) and ritonavir (RIT) were taken as control inhibitors. The interactions analysis was performed using online web tool protein-ligand interaction profiler (PLIP). M30: piperidine, 1-(5-(1,3-benzodioxol-5-yl)-1-oxo-2,4-pentadienyl)-; M33: N-formylannonaine; M35: dasycarpidan-1-methanol, acetate (ester); M37: berberine; M38: jatrorrhizine; M39: luteanine; M40: (±)-corydine; M41: (+)-magnoflorine iodide; M42:7-hydroxy-1-[(3-hydroxy-4-methoxyphenyl)methyl]-6-methoxy-2,2-dimethyl-1,2,3,4-tetrahydroisoquinolin-2-ium; M44: rotundine.