. 2024 Jun 6;56:42. doi: 10.1186/s12711-024-00912-8

Table 1.

Enrichment of variants associated with calving interval (CI) for eQTL

Set	n_total	perc_{eQTL_all}	FDR	n_signCI	perc_{eQTL_CI}	Enrichment	p_enrichment
All	13,710,843	–	–	3412	0.02^a	–	–
GE	1,196,131	8.72^a	7.5 × 10^–5	1719	50.38^b	5.8	0
EE	1,019,185	7.43^a	1.4 × 10^–4	2117	62.05^b	8.3	0
S	2,019,663	14.73^a	2.5 × 10^–4	813	23.83^b	1.4	4.5 × 10^–26
ASE	305,494	2.23^a	4.4 × 10^–4	604	17.70^b	7.9	0

FDR GWAS false discovery rate, n_total total number of variants included in set, n_signCI number of variants significantly associated with calving interval (CI), GE variants significantly associated with gene expression, EE variants significantly associated with exon expression, S variants significantly associated with gene splicing, ASE variants significantly associated with allele specific expression, expressed in % of the 13,7 M variants included in the GWAS for CI^a, or the 3412 variants significantly associated with CI^b, enrichment = perc_{eQTL_CI}/perc_{eQTL_all}, p_enrichment = p-value of the Chi-square test enrichment