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. 2024 May 24;25(3):e44. doi: 10.4142/jvs.24031

Table 2. ARGs profile of E. coli genomes in pig farm clusters in Banten Province.

Antibiotic class ARG Pig farming cluster ● Percentage (%)
1 2 3 4 5 6 7 8 9 10 11 12 13 14
Aminoglycoside aph(6)-Id ● x x x x x x x ● ● ● ● x ● 6 42.9
aph(6)-Id* x x x x x x x ● x x x x ● x 2 14.3
aph(3'')-Ib ● x x x x x x x ● ● ● ● x ● 6 42.9
aph(3'')-Ib* x x x x x x x ● x x x x ● x 2 14.3
aph(3')-Ia* x x x x x x x ● x x x x ● x 2 14.3
aac(3)-Iid ● x x x x x x x ● ● ● ● x ● 6 42.9
ant(3'')-Ia* x x x x x x x x x x x x ● x 1 7.1
ant(3'')-Ia ● ● ● ● ● ● ● ● ● ● ● ● ● ● 14 100.0
ant(3'')-Ii x ● x ● x ● ● x x x x x x x 4 28.6
aac(6')-Iid x ● x ● x ● ● x x x x x x x 4 28.6
aadA2 x ● ● x x ● ● x x x x x x x 4 28.6
aac(3)-Ib x x ● x x x x x x x x x x x 1 7.1
aadA17 x x x x x x x x x ● x ● x x 2 14.3
aadA12 x x x x x x x x ● x x x x x 1 7.1
aadA5 x x x x x x x x ● x x x x x 1 7.1
Beta-lactam blaCTX-M-55 ● x x x x x x ● ● x ● ● ● ● 7 50.0
blaOXA-10 x ● x ● ● ● ● x x x x x x x 5 35.7
blaTEM-1B x ● ● ● ● ● ● x ● x x x x x 7 50.0
blaTEM-105 x x x ● ● ● ● x x x x x x x 4 28.6
blaTEM-141 x x x ● ● ● ● x x x x x x x 4 28.6
blaCTX-M-15 x x x ● ● ● ● x x ● x x x x 5 35.7
blaTEM-122 x x x x x ● x x x x x x x x 1 7.1
blaTEM1C x x x x x x x x ● x x x x x 1 7.1
Fluoroquinolone qnrS1 ● ● ● ● ● ● ● ● ● ● ● ● ● ● 14 100.0
qnrVC4 x ● x ● ● ● ● x x x x x x x 5 35.7
Lincosamide Inu (F) ● x ● x x x x x ● ● ● ● x ● 7 50.0
Macrolide mef(B) x ● x ● ● ● ● x x x x x x x 5 35.7
mph (A) ● x x x x x x ● ● ● ● x ● ● 7 50.0
Chloramphenicol catA1 x x x x x x x x ● x x x x x 1 7.1
catB2 x ● x ● ● ● ● x x x x x x x 5 35.7
cmlA1 x ● ● ● ● ● ● x x x x x x x 6 42.9
Phosphonic fosA4 x x x x x x x ● x x x x ● x 2 14.3
Sulfonamide sul1 x ● x ● ● ● ● x ● x x x x x 6 42.9
sul2 ● ● x ● ● ● ● ● ● ● ● ● x ● 12 85.7
sul2* x x x x x x x ● x x x x ● ● 3 21.4
sul3 x ● ● ● ● ● ● x x x x x x x 6 42.9
dfrA1 x x x ● ● ● ● x x x x x x x 4 28.6
dfrA1* x x x x x x x x x ● x x x x 1 7.1
dfrA12 x ● x ● ● ● ● x x x x x x x 5 35.7
dfrA14 ● ● x ● ● ● ● ● ● ● ● x ● ● 12 85.7
dfrA16 x ● x ● ● ● ● x x x x x x x 5 35.7
dfrA17 x x x x x x x x ● x x x x x 1 7.1
Tetracycline tet(A) x x x x x ● x x x x x x x x 1 7.1
tetA* x x x x x x x x x x x ● x x 1 7.1
tet(B) x x x x x x x x ● x x x x x 1 7.1
tet(B)* x x ● x x x x x x x ● x ● x 3 21.4
tet (M) x x ● x x x x x x x x x x x 1 7.1
tetO x x x x x x x x x ● x x x x 1 7.1
tetO(34) ● x x x x x x x x x x x x x 1 7.1
tetX x ● x x x x x x x x x ● x x 2 14.3
tetX* x ● x x x x x x x x x x x x 1 7.1

ARG, antibiotic resistance gene.

●, ARG detected; x, ARG undetected.