TABLE 3.
Macaque rhadinovirus | Primers | Primer annealing temp (°C) | PCR template and method of sequence determination |
---|---|---|---|
RRV492-98 | H3 and H4 | 58 | PCR fragment, directly sequenced with specific primers |
RRV309-95 | H1 and H45 | 58 | Cloned AluI and RsaI restriction fragments, sequenced with M13 forward and reverse primers, gaps filled with specific primers |
CRV27-97 | H1 and H46 | 50 | Cloned AluI and RsaI restriction fragments, sequenced with M13 forward and reverse primers |
CRV472-97 | H1 and H5 | 50 | Cloned AluI and RsaI restriction fragments, sequenced with M13 forward and reverse primers |
CRV23-97 | H1 and H5 | 50 | Cloned AluI and RsaI restriction fragments, sequenced with M13 forward and reverse primers |
PMRV98126 | P2 and P3 | 58 | PCR fragment, directly sequenced with specific primers |
PMRV19545b | H1 and H5, H42 and H45 | 50 | Cloned AluI and RsaI restriction fragments, sequenced with M13 forward and reverse primers, gaps filled with specific primers |
The sequence of each primer is shown in Table 2.
Amplification of PMRV19545 gB sequences required nested PCR with the four primers shown.