APPENDIX TABLE 2.
Plastid genomes used in this study: species sampled, voucher information, geographical origin, and GenBank (NCBI) accession numbers. In cases where two numbers are indicated, the first one is the accession containing a reference to the original plastome annotation. Asterisk denotes newly generated sequences.
| Species | Voucher | Source or label data | GenBank reference for plastid genome |
|---|---|---|---|
| Dactylorhiza majalis (Rchb.) P.F.Hunt & Summerh. | Poland, SG-13237 (UGDA) | May et al. (2019) |
NC_044644 MK984209 |
| Dactylorhiza viridis (L.) R.M.Bateman, Pridgeon & M.W.Chase | unknown | unpublished |
NC_056192 MN824430 |
| Galearis cyclochila (Franch. & Sav.) Soó | PDBK2000-0786 (KB, KUS) | Kim et al. (2020b) |
NC_046818 MN200388 |
| Gymnadenia conopsea (L.) R.Br. | PDBK2011-0894 (KB, KUS) | Kim et al. (2020b) |
NC_046820 MN200391 |
| Gymnadenia crassinervis Finet | unknown | unpublished | MW322684 |
| Habenaria aitchisonii Rchb.f. | unknown | unpublished | MW316693 |
| Habenaria ciliolaris Kraenzl. | China, Fujian, YT-MTYFH (FAFU) |
Chen et al. (2019) | MN495954 |
| Habenaria crassilabia Kraenzl. | PDBK2018-1246 (KB, KUS) | Kim et al. (2020b) (listed as Habenaria chejuensis Y.N.Lee & K.Lee) |
NC_046821 MN200392 |
| Habenaria cruciformis Ohwi | South Korea, Gangwon, GCU190036385 (GCU) | Kim et al. (2020a) |
NC_059695 MT863537 |
| Habenaria dentata (Sw.) Schltr. | China, Guangxi, SFC-20201015012 (IBK) |
Zhang et al. (2022) | OK012095 |
| Habenaria linearifolia Maxim. | unknown | Kim et al. (2020a) |
NC_059696 MT863538 |
| Habenaria pantlingiana Kraenzl. | unknown | Lin et al. (2015) (as Habenaria longidenticulata, nom. nud.) |
NC_026775 KJ524104 |
| Hemipilia gracilis (Blume) Y.Tang, H.Peng & T.Yukawa | PDBK2008-0404 (KB, KUS) | Kim et al. (2020b) |
NC_046810 MN200376 |
| Hemipilia yajiangensis G.W.Hu, Jia X.Yang & Q.F.Wang | China, Sichuan, J.X. Yang, S. Peng, Y. Wang, S.X. Ding, J.J. Wang PS-00264 (HIB: 0188766, 0188768, 0188767, paratypes) | Yang et al. (2022) |
NC_067080 OM009241 |
| Ophrys fusca ssp. iricolor (Desf.) K.Richt. | Greece, Crete | Roma et al. (2018) | AP018716 |
| Ophrys insectifera ssp. aymoninii Breistr. | France, Occitania | Bertrand et al. (2021) | MW309825 |
| Ophrys lutea Cav. | France, Occitania | Bertrand et al. (2021) |
NC_058525 MW309826 |
| Ophrys sphegodes Mill. | Italy, Apulia | Roma et al. (2018) | AP018717 |
| Pecteilis radiata (Thunb.) Raf. | PDBK2015-1271 | Kim et al. (2020a) |
NC_035834 KX871237 |
| Peristylus densus (Lindl.) Santapau & Kapadia | PDBK2018-1247 (KB, KUS) | Kim et al. (2020b) (listed as Habenaria flagellifera Makino) |
NC_046801 MN200366 |
| Platanthera chlorantha (Custer) Rchb. | Poland, SG-13236 (UGDA) |
Lallemand et al. (2019) |
NC_044626 MK937914 |
| Platanthera japonica (Thunb.) Lindl. | China, Shaanxi (WNU) | Dong et al. (2018) |
NC_037440 MG925368 |
| Platanthera mandarinorum Rchb.f. | PDBK2013-0398 (KB, KUS) | Kim et al. (2020b) |
NC_046805 MN200370 |
| Platanthera ussuriensis (Regel) Maxim. | China, Liaoning, B. Qu, X. Chen s.n. |
Han et al. (2022) | MN686021 |
| Satyrium nepalense D.Don | China, Yunnan, X.K. Ma 006 (FAFU) |
Ma et al. (2019) | MN497244 |
| Vietorchis aurea Aver. & Averyanova | Vietnam, Ninh Binh, May Van Xinh MVX 261 (LE: LE01076723) | Cuc Phuong National Park, 200‒300 m, 05.2004 |
OQ318186*–OQ318196* (11 individual regions) |
| Vietorchis furcata Aver. & Nuraliev | Vietnam, Dak Lak, M.S. Nuraliev 998 (LE: LE01076759) | Lak distr., Bong Krang munic., Chu Yang Sin national park, 12 km S of Krong Kmar village, forest, near small river, c. 1100 m, 12°23’41”N 108°20’55”E, 28.05.2014 | OQ318871* |
| Outgroups | |||
| Goodyera pubescens (Willd.) R.Br. | USA, Wisconsin, JH170809001 (GCU) | Kim and Kim (2022) |
NC_064116 OM314912 |
| Spiranthes sinensis (Pers.) Ames | South Korea, Jeju, TH200805012 (GCU) | Kim and Kim (2022) |
NC_064118 OM314917 |
Asterisk denotes newly generated sequences.