Table 1.
Primer | Sequence (5’‐3’) | Product size (bp) | |
---|---|---|---|
RT‐PCR primers 17 | |||
γ‐synuclein‐RT‐5′ | CAAGAAGGGCTTCTCCATCGCCAAGG | 338 (60 to 397) | |
γ‐synuclein‐RT‐3′ | CCTCTTTCTCTTTGGATGCCACACCC | ||
GAPDH‐RT‐5′ | GAAGGTGAAGGTCGGAGTC | 226 (108 to 333) | |
GAPDH‐RT‐3′ | GAAGATGGTGATGGGATTTC | ||
Real‐time RT‐PCR primers | |||
γ‐synuclein‐Real‐RT‐5′ | GGAGGACTTGAGGCCATCTG | 73 (339 to 411) | |
γ‐synuclein‐Real‐RT‐3′ | CTCCTCTGCCACTTCCTCTTTC | ||
GAPDH‐Real‐RT‐5′ | GGACCTGACCTGCCGTCTAG | 100 (831 to 930) | |
GAPDH‐Real‐RT‐3′ | GTAGCCCAGGATGCCCTTGA | ||
Bisulfite sequencing PCR primers 18 | |||
γ‐synuclein‐SF | GGTTGAGTTAGTAGGAGTTTA | 415 (−275 to +140) | |
γ‐synuclein‐SR | CCTACCATACCCCACTTACCC | ||
Nested MSP primers 18 | |||
Methylated | γ‐synuclein‐MF | TCGTATTAATATTTTATCGGCGT | 194 (−139 to +55) |
γ‐synuclein‐MR | CCGCACCCACCACGCCCTCCTTAACGA | ||
Unmethylated | γ‐synuclein‐UF | TTGGTGTTAATAGGAGGTATTGGGGATAGTTGTTGTG | 177 (−123 to +54) |
γ‐synuclein‐UR | CACACCCACCACACCCTCCTTAACAAT | ||
Real‐time Q‐MSP primers | |||
Methylated | γ‐synuclein‐Real‐MF | TTCGTATTAATATTTTATCGGCGT | 104 (−140 to −37) |
γ‐synuclein‐Real‐MR | GAAACTAAATCTCCCTACGAACTACG | ||
Unmethylated | γ‐synuclein‐Real‐UF | GGTTTTTGTATTAATATTTTATTGGTG | 110 (−144 to −35) |
γ‐synuclein‐Real‐UR | ACAAAACTAAATCTCCCTACAAACTACAA | ||
WT primers 18 | |||
γ‐synuclein‐WF | ACGCAGGGCTGGCTGGGCTCCA | 242 (−169 to +73) | |
γ‐synuclein‐WR | CCTGCTTGGTCTTTTCCACC |
The CpG sites within the primer sequences are underlined