Table 2.
Position † | Nucleotide sequence (5′–3′) | Polarity |
---|---|---|
PCR primer | ||
p1 : 1821–1841 | TTTTTCACCTCTGCCTAATCA | Sense |
p2 : 1825–1806 | AAAAAGTTGCATGGTGCTGG | Antisense |
p3 : 1922–1940 | GAATTTGGAGCTTCTGTGG | Sense |
p4 : 1788–1771 | GCCTACAGCCTCCTAGTA | Antisense |
p5 : 1604–1623 | TCGCATGGAGACCACCGTGA | Sense |
p6 : 2076–60 | ATAGCTTGCCTGAGTGC | Antisense |
p7 : 1653–1672 | CATAAGAGGACTCTTGGACT | Sense |
p8 : 1974–1957 | GGAAAGAAGTCAGAAGGC | Antisense |
Sequencing primer | ||
242–258 | CAGAGTCTAGACTCGTGG | Sense |
687–668 | GGCACTAGTAAACTGAGCCA | Antisense |
456–475 | AAGGTATGTTGCCCGTTTGT | Sense |
771–752 | TACAGACTTGGCCCCCAATA | Antisense |
668–687 | TGGCTCAGTTTACTAGTGCC | Sense |
1103–1086 | GGCGAGAAAGTGAAAGCC | Antisense |
1054–1073 | ATGCCTTTATATGCATGTAT | Sense |
1436–1418 | GACGGGACGTAGACAAAGG | Antisense |
1267–1285 | CATACTGCGGAACTCCTAGC | Sense |
2470–2453 | TTATGAGTCCAAGGGATA | Antisense |
2301–2320 | CACCAAATGCCCCTATCTTA | Sense |
2656–2639 | GGATAGAACCTAGCAGGC | Antisense |
2637–2656 | ATGCCTGCTAGGTTCTATCC | Sense |
3155–3138 | CTTCCTGACTGCCGATTG | Antisense |
3082–3099 | CCTCAGGCTCAGGGCATA | Sense |
475–456 | ACAAACGGGCAACATACCTT | Antisense |
Nucleotide position based on the sequence of hepatitis B virus (HBV) genotype C (accession no. X01587). Primers p3 to p8 were also used for sequencing.