Table 1.
Primer sequences, fragment size, annealing temperatures, and number of PCR cycles used for methylation‐specific PCR
5′ → 3′ | Size (bp) | Annealing temperature (°C) | Number of PCR cycles | |
---|---|---|---|---|
APC unmethylated | F: AATTTGTTGGATGTGGATTAGGGT R: AACCTCATATCAATCACATACA | 89 | 61 | 35 |
APC methylated | F: CGTTGGATGCGGATTAGGGC R: CCTCATATCGATCACGTACG | 84 | 61 | 35 |
E‐cadherin unmethylated | F: TAATTTTAGGTTAGAGGGTTATTGT R: CACAACCAATCAACAACACA | 97 | 59 | 37 |
E‐cadherin methylated | F: TTAGGTTAGAGGGTTATCGCGT R: TAACTAAAAATTCACCTACCGAC | 116 | 61 | 37 |
APC, adenomatous polyposis coli; E‐cadherin, epithelial cadherin; F, forward; R, reverse.