Table 2.

Prognosis‐related genes identified using microarray analysis

P‐value	Hazard ratio	Description	Gene	Probe set	Pass	PCR
0.0002	1.8	Epidermal growth factor receptor	EGFR	201984_s_at	2	PCR	1	0.1
0.0005	0.1	DEAD (Asp‐Glu‐Ala‐Asp) box polypeptide 54	DDX54	219111_s_at			2	0.1
0.0005	0.5	Chimerin (chimaerin) 2	CHN2	213385_at			3	0.1
0.0005	6.1	Ubiquitin‐like domain containing CTD phosphatase 1	UBLCP1	227413_at			4	0.2
0.0006	0.5	PTK2 protein tyrosine kinase 2	PTK2	241387_at			5	0.2
0.0008	3.4	Der1‐like domain family, member 2	DERL2	218333_at			6	0.2
0.0008	0.5	Leucine rich repeat containing 14	LRRC14	32062_at			7	0.2
0.0009	4.5	WD repeat domain 33	WDR33	222763_s_at		PCR	8	0.2
0.0009	0.1	Rhomboid domain containing 3	RHBDD3	217622_at			9	0.2
0.001	0.3	Myosin regulatory light chain interacting protein	MYLIP	228098_s_at	3	PCR	10	0.2
0.0013	4.7	Chromosome 14 open reading frame 43	C14orf43	225980_at		PCR	11	0.2
0.0013	0.2	BCL6 co‐repressor	BCOR	223915_at			12	0.2
0.0013	0.5	MAD1 mitotic arrest deficient‐like 1 (yeast)	MAD1L1	233921_s_at			13	0.2
0.0013	4.9	Chromosome 14 open reading frame 109	C14orf109	213246_at			14	0.2
0.0014	4.2	Hypothetical protein LOC124512	LOC124512	225808_at			15	0.2
0.0014	5.0	Ring finger protein 167	RNF167	212047_s_at			16	0.2
0.0014	0.6	Hypothetical LOC25845	LOC25845	225457_s_at			17	0.2
0.0014	4.2	General transcription factor II, i	GTF2I	232710_at			18	0.3
0.0014	0.2	Rho guanine nucleotide exchange factor (GEF) 10‐like	ARHGEF10L	1570511_at			19	0.3
0.0014	0.3	G kinase anchoring protein 1	GKAP1	229312_s_at		PCR	20	0.3
0.0015	1.9	Glutathione peroxidase 3 (plasma)	GPX3	214091_s_at	2	PCR	21	0.3
0.0016	0.5	Dachshund homolog 1 (Drosophila)	DACH1	1567101_at	2	PCR	22	0.3
0.0016	0.3	Diacylglycerol kinase, theta 110kDa	DGKQ	226605_at			23	0.3
0.0017	0.6	Hepatocellular carcinoma‐associated antigen 112	HCA112	218345_at			24	0.3
0.0018	3.5	Mediator of RNA polymerase II transcription, subunit 31 homolog	MED31	222867_s_at			25	0.3
0.0018	6.9	Tyrosine 3‐monooxygenase/tryptophan 5‐monooxygenase activation protein, epsilon polypeptide	YWHAE	210317_s_at		PCR	26	0.3
0.0018	0.1	KH domain containing, RNA binding, signal transduction associated 1	KHDRBS1	201488_x_at			27	0.3
0.0019	0.3	Solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16	SLC25A16	210686_x_at			28	0.3
0.0019	4.9	Hypothetical protein LOC51255	LOC51255	223064_at			29	0.3
0.002	0.2	Cyclin L2 /// similar to Aurora kinase A‐interacting protein	CCNL2 /// LOC643556	222999_s_at			30	0.3
0.002	7.4	Lectin, mannose‐binding, 1	LMAN1	224629_at			31	0.3
0.002	0.2	Erythrocyte membrane protein band 4.1 like 4A	EPB41L4A	228259_s_at			32	0.3
0.0022	0.2	KIAA0999 protein	KIAA0999	204155_s_at			33	0.3
0.0022	0.5	ELOVL family member 7	ELOVL7	227180_at			34	0.3
0.0023	4.0	Churchill domain containing 1	CHURC1	233268_s_at			35	0.4
0.0024	4.0	Yippee‐like 2 (Drosophila)	YPEL2	227020_at			36	0.4
0.0024	5.9	Hermansky–Pudlak syndrome 1	HPS1	210112_at			37	0.4
0.0025	0.3	Hypothetical protein LOC285831	LOC285831	228857_at			38	0.4
0.0026	3.5	CDC37 cell division cycle 37 homolog (Saccharomyces cerevisiae)‐like 1	CDC37L1	219343_at			39	0.4
0.0026	2.1	Ankyrin repeat and SOCS box‐containing 9	ASB9	205673_s_at			40	0.4
0.0026	0.2	Hypothetical gene supported by AK125149	LOC401577	239247_at			41	0.5
0.0026	0.3	TBC1 domain family, member 23	TBC1D23	236755_at			42	0.5
0.0026	0.3	MRNA full length insert cDNA clone EUROIMAGE 2362292		235505_s_at			43	0.5
0.0026	0.4	Dehydrogenase/reductase (SDR family) member 8	DHRS8	217989_at			44	0.5
0.0026	0.4	Nuclear receptor coactivator 2	NCOA2	242369_x_at			45	0.5
0.0026	0.2	MRNA; cDNA DKFZp667E0114 (from clone DKFZp667E0114)		235660_at			46	0.5
0.0027	0.4	Transforming, acidic coiled‐coil containing protein 1	TACC1	242290_at			47	0.5
0.0027	0.2	POU domain, class 2, transcription factor 1	POU2F1	1562280_at			48	0.5
0.0027	2.9	p21(CDKN1A)‐activated kinase 6	PAK6	1555310_a_at				0.5
0.0027	0.5	Mannosyl (alpha‐1,3‐)‐glycoprotein β‐1,4‐N‐acetylglucosaminyltransferase, isozyme A	MGAT4A	226039_at			50	0.5
0.0027	5.1	Zinc finger CCCH‐type containing 14	ZC3H14	204216_s_at			51	0.5
0.0028	0.5	Acyl‐CoA synthetase short‐chain family member 2	ACSS2	235805_at			52	0.5
0.0028	0.3	Programmed cell death 6	PDCD6	222380_s_at		PCR	53	0.6
0.0029	3.8	ERGIC and golgi 2	ERGIC2	226422_at			54	0.6
0.0029	0.4	Erythrocyte membrane protein band 4.1 like 5	EPB41L5	225855_at			55	0.6
0.003	6.5	Chromosome 14 open reading frame 32	C14orf32	212644_s_at			56	0.6
0.0031	0.2	Transcribed locus		239437_at			57	1.8
0.0031	0.3	DOT1‐like, histone H3 methyltransferase (S. cerevisiae)	DOT1L	231297_at			58	1.9
0.0031	2.2	Transcription elongation factor A (SII)‐like 8	TCEAL8	224819_at			59	1.9
0.0031	0.3	Laminin, β 1	LAMB1	236437_at			60	2.0
0.0032	2.7	FK506 binding protein 5	FKBP5	224840_at			61	2.0
0.0033	0.5	Integrin, α 6	ITGA6	244665_at			62	2.1
0.0034	2.7	COMM domain containing 9	COMMD9	218072_at			63	2.2
0.0034	0.2	Eukaryotic translation initiation factor 4 γ, 3	EIF4G3	201936_s_at			64	2.3
0.0035	0.5	235616_at	235616_at	235616_at			65	2.6
0.0036	1.9	Metallothionein 1X	MT1X	204326_x_at		PCR	66	2.6
0.0036	2.7	Peroxiredoxin 5	PRDX5	1560587_s_at			67	2.7
0.0037	0.3	Core‐binding factor, runt domain, α subunit 2; translocated to, 2	CBFA2T2	207625_s_at			68	2.7
0.0037	0.4	Transcribed locus, moderately similar to XP_531878.2		230168_at			69	2.7
0.0038	0.3	Zinc finger protein 346	ZNF346	236267_at			70	2.8
0.0038	2.0	Metallothionein 1H‐like protein /// hypothetical protein LOC650610	LOC645745 /// LOC650610	211456_x_at			71	2.9
0.0039	0.2	Hypothetical protein DKFZp586I1420	DKFZp586I1420	213546_at			72	3.4
0.0039	2.0	Adrenergic, β‐2‐, receptor, surface	ADRB2	206170_at			73	3.5
0.0039	0.3	CTD‐binding SR‐like protein rA9	KIAA1542	234952_s_at			74	3.5
0.0039	2.6	Peroxiredoxin 5	PRDX5	222994_at			75	3.6
0.004	0.2	ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1	ATP6V1C1	226463_at			76	3.8
0.004	8.0	XK, Kell blood group complex subunit‐related family, member 8	XKR8	218753_at			77	3.8
0.004	0.3	Caspase 6, apoptosis‐related cystein peptidase	CASP6	242323_at			78	4.0
0.0041	0.4	Coagulation factor XII (Hageman factor)	F12	205774_at			79	4.0
0.0041	0.3	Centaurin, γ 2	CENTG2	240758_at			80	4.2
0.0042	0.6	LR8 protein	LR8	220532_s_at			81	4.2
0.0042	0.2	WD repeat domain 42A	WDR42A	243318_at			82	4.5
0.0042	2.6	Potassium channel tetramerisation domain containing 14	KCTD14	219545_at			83	4.7
0.0043	2.8	6‐Phosphogluconolactonase	PGLS	218388_at			84	4.9
0.0044	3.8	Bruno‐like 6, RNA binding protein (Drosophila)	BRUNOL6	227775_at			85	4.9
0.0044	2.3	Zinc finger protein 415	ZNF415	205514_at			86	5.0
0.0045	0.5	HIR histone cell cycle regulation defective homolog A (S. cerevisiae)	HIRA	240451_at			87	5.1
0.0046	0.5	Cardiolipin synthase 1	CRLS1	241741_at			88	5.9
0.0046	0.3	c‐mer proto‐oncogene tyrosine kinase	MERTK	233079_at			89	6.1
0.0047	0.2	Additional sex combs like 2 (Drosophila)	ASXL2	218659_at			90	6.5
0.0047	3.6	Platelet endothelial aggregation receptor 1	PEAR1	228618_at			91	6.9
0.0047	0.3	Core‐binding factor, runt domain, α subunit 2; translocated to, 2	CBFA2T2	238549_at			92	7.4
0.005	0.6	Lysosomal associated protein transmembrane 4 β	LAPTM4B	208029_s_at			93	8.0

Pass, number of overlapped probes; PCR, the genes that were subsequently examined using real‐time RT‐PCR.