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[Preprint]. 2024 Jun 2:2024.05.28.596337. [Version 1] doi: 10.1101/2024.05.28.596337

Figure 1. The clusterCleaver workflow.

Figure 1.

Taking clustered single-cell RNA-sequencing data as input, clusterCleaver computes EMD on predicted surface maker genes. Candidate surface marker genes are experimentally screened using flow cytometry, then surface staining antibodies which show subpopulation separation can be used to FACS isolate cell subpopulations. Transcriptomic identity of sorted cell subpopulations can be validated by performing bulk RNA-seq.