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. 2024 May 30;20(5):e1012034. doi: 10.1371/journal.ppat.1012034

Fig 1. A putative RT domain in ilarvirus RNA3.

Fig 1

(A) Map of the AV2 genome. Coding ORFs 1, 2a, 2b, MP (movement protein) and CP (coat protein) are annotated in light blue. The 193 nt 3′UTR sequence that is shared between all three segments is annotated in red. Note that in RNA1, this sequence overlaps with ORF1. In the old annotation, there is a substantial noncoding sequence (black) between the end of the CP ORF and the start of the shared 3’UTR sequence. The putative readthrough (RT) ORF (pink) fills this apparent gap. (B) Three-frame coding potential analysis of RNA3 as measured using MLOGD. Positive scores indicate that the sequence is likely to be coding in the given reading frame (blue–frame of the MP, CP and RT ORFs; green–+1 frame; red–+2 frame).