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. 2024 Jun 12;28(11):e18485. doi: 10.1111/jcmm.18485

TABLE 1.

Patients with rare nonsynonymous variants in liver panel genes.

Patient Disease Gene Variation
Type Change Status AF ACMG‐AMP
Classification Criteria
P1 rELT ACOX2 Missense NM_003500.4:c.674G > A:p.Arg225Gln Hom 5.14E‐05 VUS PM1, PP3, PM5
P2 rELT PYGL Nonsense NM_002863.5:c.1180G > T:p.Glu394* Hom P PVS1, PM2, PP3
SLC27A5 Missense NM_012254.3:c.923C > T:p.Thr308Met Hom 1.86E‐05 VUS PM1, PM2, PP3
P3 rELT PHKA2 Missense NM_000292.3:c.556C > T:p.Arg186Cys Hem 9.26E‐07 P PS1, PM1, PM2, PP3, PP5
P4 rELT ABCB4 Missense NM_000443.4:c.2950G > A:p.Ala984Thr Hom 1.37E‐06 LP PS1, PM2, PP3, BP1
P5 ALF CDAN1 Missense NM_138477.2:c.1945C > T:p.Arg649Trp Hom 3.28E‐05 LP PS1, PM2, PP3
P6 rELT JAG1 Missense NM_000214.3:c.322A > C:p.Asn108His Het 2.05E‐06 VUS PM2, PP3, BP1
PCK2 Missense NM_004563.4:c.644G > A:p.Gly215Asp Hom 2.01E‐04 VUS PM1, PM2, PP3, BP1
VPS33B Missense NM_018668.5:c.1209G > T:p.Leu403Phe Hom 1.37E‐06 VUS PM1, PM2, PP3, BP1

Abbreviations: AF: overall allele frequency in gnomAD v4.1.0 (as of May 08, 2024); Hom, Homozygous, Hem, Hemizygous, Het: Heterozygous, VUS, variant of uncertain significance, P: Pathogenic, LP: Likely pathogenic.