TABLE 1.
Patients with rare nonsynonymous variants in liver panel genes.
Patient | Disease | Gene | Variation | |||||
---|---|---|---|---|---|---|---|---|
Type | Change | Status | AF | ACMG‐AMP | ||||
Classification | Criteria | |||||||
P1 | rELT | ACOX2 | Missense | NM_003500.4:c.674G > A:p.Arg225Gln | Hom | 5.14E‐05 | VUS | PM1, PP3, PM5 |
P2 | rELT | PYGL | Nonsense | NM_002863.5:c.1180G > T:p.Glu394* | Hom | ‐ | P | PVS1, PM2, PP3 |
SLC27A5 | Missense | NM_012254.3:c.923C > T:p.Thr308Met | Hom | 1.86E‐05 | VUS | PM1, PM2, PP3 | ||
P3 | rELT | PHKA2 | Missense | NM_000292.3:c.556C > T:p.Arg186Cys | Hem | 9.26E‐07 | P | PS1, PM1, PM2, PP3, PP5 |
P4 | rELT | ABCB4 | Missense | NM_000443.4:c.2950G > A:p.Ala984Thr | Hom | 1.37E‐06 | LP | PS1, PM2, PP3, BP1 |
P5 | ALF | CDAN1 | Missense | NM_138477.2:c.1945C > T:p.Arg649Trp | Hom | 3.28E‐05 | LP | PS1, PM2, PP3 |
P6 | rELT | JAG1 | Missense | NM_000214.3:c.322A > C:p.Asn108His | Het | 2.05E‐06 | VUS | PM2, PP3, BP1 |
PCK2 | Missense | NM_004563.4:c.644G > A:p.Gly215Asp | Hom | 2.01E‐04 | VUS | PM1, PM2, PP3, BP1 | ||
VPS33B | Missense | NM_018668.5:c.1209G > T:p.Leu403Phe | Hom | 1.37E‐06 | VUS | PM1, PM2, PP3, BP1 |
Abbreviations: AF: overall allele frequency in gnomAD v4.1.0 (as of May 08, 2024); Hom, Homozygous, Hem, Hemizygous, Het: Heterozygous, VUS, variant of uncertain significance, P: Pathogenic, LP: Likely pathogenic.