Table 1.
Epidemiological data the novel CHIKV samples sequenced as part of this study.
| Sample ID | Country | Colelction date | Age | Sex | CTs | Reads | Depth of Coverage | Coverage | Assignment | Lineages | Accession_Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| AR20230720_MS3113964_10557_CHIK|2023-03-03 | Argentina | 2023-03-03 | 37 | M | 21 | 182202 | 2018.9 | 94.5 | Chikungunya virus | East-Central-South-African | OR631864 |
| AR20230720_MS3113964_10558_CHIK|2023-03-01 | Argentina | 2023-03-01 | 63 | F | 21 | 182202 | 2018.9 | 94.5 | Chikungunya virus | East-Central-South-African | OR631866 |
| AR20230720_MS3113964_10559_CHIK|2023-02-27 | Argentina | 2023-02-27 | 41 | F | 19 | 249817 | 2739.9 | 95.5 | Chikungunya virus | East-Central-South-African | OR631865 |
| AR20230720_MS3113964_10560_CHIK|2023-02-23 | Argentina | 2023-02-23 | 58 | F | 25 | 190036 | 2103.5 | 94.4 | Chikungunya virus | East-Central-South-African | OR631863 |
| AR20230720_MS3113964_10561_CHIK|2023-02-20 | Argentina | 2023-02-20 | 26 | M | 32 | 293245 | 3218.4 | 95.3 | Chikungunya virus | East-Central-South-African | OR631867 |
| AR20230720_MS3113964_10562_CHIK|2023-02-10 | Argentina | 2023-02-10 | 29 | F | 24 | 220990 | 2444.9 | 94.6 | Chikungunya virus | East-Central-South-African | OR631868 |
| AR20230720_MS3113964_10563_CHIK|2023-02-08 | Argentina | 2023-02-08 | 24 | M | 26 | 232290 | 2588.8 | 93.4 | Chikungunya virus | East-Central-South-African | OR631872 |
| AR20230720_MS3113964_10564_CHIK|2023-02-06 | Argentina | 2023-02-06 | 83 | F | 29 | 141390 | 1664.2 | 87.7 | Chikungunya virus | East-Central-South-African | OR631870 |
| AR20230720_MS3113964_10565_CHIK|2023-02-08 | Argentina | 2023-02-08 | 34 | M | 22 | 311823 | 3428.1 | 94.6 | Chikungunya virus | East-Central-South-African | OR631869 |
| AR20230720_MS3113964_10566_CHIK|2023-02-05 | Argentina | 2023-02-05 | 50 | M | 20 | 188822 | 2087.9 | 94.5 | Chikungunya virus | East-Central-South-African | OR631871 |
| AR20230720_MS3113964_10568_CHIK|2023-02-02 | Argentina | 2023-02-02 | 40 | F | 31 | 139393 | 1718.5 | 83.8 | Chikungunya virus | East-Central-South-African | OR631873 |
| AR20230720_MS3113964_10569_CHIK|2023-01-25 | Argentina | 2023-01-25 | 35 | M | 25 | 200406 | 2221.9 | 94.1 | Chikungunya virus | East-Central-South-African | OR631875 |
| AR20230720_MS3113964_10570_CHIK|2023-01-25 | Argentina | 2023-01-25 | 35 | F | 20 | 235347 | 2615.9 | 94.6 | Chikungunya virus | East-Central-South-African | OR631874 |
| AR20230720_MS3113964_10571_CHIK|2023-01-19 | Argentina | 2023-01-19 | 16 | F | 24 | 217508 | 2398.3 | 94.5 | Chikungunya virus | East-Central-South-African | OR631876 |
| AR20230720_MS3113964_10572_CHIK|2023-01-13 | Argentina | 2023-01-13 | 51 | M | 19 | 330935 | 3654.5 | 94.5 | Chikungunya virus | East-Central-South-African | OR631877 |
| AR20230720_MS3113964_10573_CHIK|2023-01-19 | Argentina | 2023-01-19 | 26 | M | 26 | 261053 | 2862.3 | 94.5 | Chikungunya virus | East-Central-South-African | OR631878 |
| AR20230720_MS3113964_10574_CHIK|2023-03-03 | Argentina | 2023-03-03 | 48 | M | 25 | 296500 | 3269.7 | 94.5 | Chikungunya virus | East-Central-South-African | OR631879 |
| AR20230720_MS3113964_10575_CHIK|2023-02-27 | Argentina | 2023-02-27 | 11 | F | 24 | 234250 | 2593.2 | 94.5 | Chikungunya virus | East-Central-South-African | OR631881 |
| AR20230720_MS3113964_10576_CHIK|2023-02-10 | Argentina | 2023-02-10 | 14 | M | 28 | 196983 | 2269.1 | 89.7 | Chikungunya virus | East-Central-South-African | OR631880 |
| AR20230720_MS3113964_10577_CHIK|2023-03-02 | Argentina | 2023-03-02 | 66 | M | 29 | 129770 | 1495.2 | 90.2 | Chikungunya virus | East-Central-South-African | OR631882 |
| AR20230720_MS3113964_10578_CHIK|2023-03-01 | Argentina | 2023-03-01 | 41 | M | 23 | 208425 | 2293.3 | 94.5 | Chikungunya virus | East-Central-South-African | OR631883 |
| AR20230720_MS3113964_10579_CHIK|2023-03-01 | Argentina | 2023-03-01 | 45 | F | 24 | 202986 | 2218.0 | 95.4 | Chikungunya virus | East-Central-South-African | OR631886 |
| AR20230720_MS3113964_10580_CHIK|2023-02-16 | Argentina | 2023-02-16 | 55 | F | 23 | 203661 | 2241.7 | 94.5 | Chikungunya virus | East-Central-South-African | OR631885 |
| AR20230720_MS3148148_10811_CHIK|2023-03-03 | Argentina | 2023-03-03 | 42 | F | 36 | 62487 | 1137.6 | 54.2 | Chikungunya virus | East-Central-South-African | OR631884 |
| AR20230720_MS3148148_10812_CHIK|2023-02-26 | Argentina | 2023-02-26 | 13 | M | 23 | 226838 | 2483.4 | 94.5 | Chikungunya virus | East-Central-South-African | OR631887 |
| AR20230720_MS3148148_10813_CHIK|2023-02-10 | Argentina | 2023-02-10 | 38 | F | 33 | 219315 | 2414.3 | 93.3 | Chikungunya virus | East-Central-South-African | OR631888 |
| AR20230720_MS3148148_10814_CHIK|2023-03-04 | Argentina | 2023-03-04 | 60 | F | 32 | 226769 | 2512.3 | 93.3 | Chikungunya virus | East-Central-South-African | OR631889 |
| AR20230720_MS3148148_10815_CHIK|2023-03-29 | Argentina | 2023-03-29 | 40 | F | 20 | 243195 | 2647.9 | 95.9 | Chikungunya virus | East-Central-South-African | OR631891 |
| AR20230720_MS3148148_10816_CHIK|2023-02-16 | Argentina | 2023-02-16 | 11 | F | 25 | 233386 | 2562.4 | 94.3 | Chikungunya virus | East-Central-South-African | OR631890 |
| AR20230720_MS3148148_10817_CHIK|2023-02-13 | Argentina | 2023-02-13 | 44 | M | 17 | 252187 | 2724.5 | 96.9 | Chikungunya virus | East-Central-South-African | OR631892 |
| AR20230720_MS3148148_10818_CHIK|2023-02-16 | Argentina | 2023-02-16 | 22 | M | 19 | 272955 | 2991.6 | 95.2 | Chikungunya virus | East-Central-South-African | OR631893 |
| AR20230720_MS3148148_10819_CHIK|2023-04-12 | Argentina | 2023-04-12 | 32 | F | 20 | 237637 | 2538.2 | 96.9 | Chikungunya virus | East-Central-South-African | OR631895 |
| AR20230720_MS3148148_10820_CHIK|2023-03-29 | Argentina | 2023-03-29 | 32 | F | 18 | 189153 | 2057.8 | 95.2 | Chikungunya virus | East-Central-South-African | OR631896 |
| AR20230720_MS3148148_10821_CHIK|2023-03-30 | Argentina | 2023-03-30 | 58 | F | 23 | 223415 | 2438.4 | 94.5 | Chikungunya virus | East-Central-South-African | OR631894 |
| AR20230720_MS3148148_10822_CHIK|2023-04-24 | Argentina | 2023-04-24 | 53 | M | 18 | 259994 | 2805.2 | 96.7 | Chikungunya virus | East-Central-South-African | OR631897 |
| AR20230720_MS3148148_10823_CHIK|2023-04-25 | Argentina | 2023-04-25 | 67 | F | 25 | 223881 | 2456.4 | 94.5 | Chikungunya virus | East-Central-South-African | OR631898 |
| AR20230720_MS3148148_10824_CHIK|2023-04-28 | Argentina | 2023-04-28 | 15 | F | 20 | 256218 | 2760.2 | 97.1 | Chikungunya virus | East-Central-South-African | OR631899 |
| AR20230720_MS3148148_10825_CHIK|2023-03-29 | Argentina | 2023-03-29 | 32 | F | 21 | 233298 | 2586.7 | 94.5 | Chikungunya virus | East-Central-South-African | OR631901 |
| AR20230720_MS3148148_10826_CHIK|2023-04-21 | Argentina | 2023-04-21 | 70 | F | 22 | 285612 | 3129.0 | 94.6 | Chikungunya virus | East-Central-South-African | OR631900 |
| AR20230720_MS3148148_10833_CHIK|2023-03-09 | Argentina | 2023-03-09 | 39 | F | 21 | 183797 | 2032.9 | 94.5 | Chikungunya virus | East-Central-South-African | OR631906 |
| AR20230720_MS3148148_10834_CHIK|2023-03-14 | Argentina | 2023-03-14 | 54 | F | 27 | 160358 | 1730.3 | 96.5 | Chikungunya virus | East-Central-South-African | OR631907 |
| AR20230720_MS3148148_10835_CHIK|2023-03-22 | Argentina | 2023-03-22 | 51 | F | 21 | 247977 | 2659.1 | 97.8 | Chikungunya virus | East-Central-South-African | OR631908 |
| AR20230720_MS3148148_10836_CHIK|2023-03-24 | Argentina | 2023-03-24 | 3 | F | 28 | 193699 | 2115.0 | 94.5 | Chikungunya virus | East-Central-South-African | OR631910 |
| AR20230720_MS3148148_10837_CHIK|2023-03-09 | Argentina | 2023-03-09 | 17 | M | 25 | 264238 | 2891.5 | 94.5 | Chikungunya virus | East-Central-South-African | OR631909 |
| AR20230909_11016_CHIKV|2023-03-03 | Argentina | 2023-01-25 | 28 | F | 24 | 208425 | 2293.3 | 94.5 | Chikungunya virus | East-Central-South-African | OR631911 |
| AR20230909_11017_CHIKV|2023-03-01 | Argentina | 2023-01-15 | 35 | F | 24 | 202986 | 2218.0 | 95.4 | Chikungunya virus | East-Central-South-African | OR631912 |
| AR20230909_11018_CHIKV|2023-02-27 | Argentina | 2023-01-15 | 57 | M | 32 | 203661 | 2241.7 | 94.5 | Chikungunya virus | East-Central-South-African | OR631913 |
| AR20230909_11019_CHIKV|2023-02-23 | Argentina | 2023-01-22 | 49 | M | 22 | 62487 | 1137.6 | 54.2 | Chikungunya virus | East-Central-South-African | OR631914 |
| AR20230909_11020_CHIKV|2023-02-20 | Argentina | 2023-01-11 | 10 | F | 23 | 226838 | 2483.4 | 94.5 | Chikungunya virus | East-Central-South-African | OR631915 |
| AR20230909_11021_CHIKV|2023-02-10 | Argentina | 2023-05-04 | 42 | F | 20 | 219315 | 2414.3 | 93.3 | Chikungunya virus | East-Central-South-African | OR631916 |
| AR20230909_11022_CHIKV|2023-02-08 | Argentina | 2023-04-25 | 12 | M | 18 | 233298 | 2586.7 | 94.5 | Chikungunya virus | East-Central-South-African | OR631917 |
| AR20230720|MS3148148|10827|CHIK|BUENOSAIRES|2023-04-21 | Argentina | 2016-02-06 | 22 | F | 17 | 287566 | 3023.2 | 95.2 | Chikungunya virus | Asian and Caribbean | OR631902 |
| AR20230720|MS3148148|10828|CHIK|SALTA|2016-02-06 | Argentina | 2026-03-14 | 32 | M | 14 | 206969 | 2186.9 | 95.3 | Chikungunya virus | Asian and Caribbean | OR631903 |
| AR20230720|MS3148148|10829|CHIK|SALTA|2026-03-14 | Argentina | 2016-03-12 | 32 | F | 22 | 217779 | 2318.9 | 94.6 | Chikungunya virus | Asian and Caribbean | OR631904 |
| AR20230720|MS3148148|10830|CHIK|SALTA|2016-03-12 | Argentina | 2016-03-09 | 58 | F | 24 | 241838 | 2574.0 | 94.6 | Chikungunya virus | Asian and Caribbean | OR631905 |