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. 2024 May 30;15:1392607. doi: 10.3389/fmicb.2024.1392607

Table 1.

Comparison of Sanger sequencing and amplicon sequencing of Glesvær samples [distance* (% SNPs/site)/numbers of SNPs].

Reference or sample Sample source Technology 1 2 3 4 5 6
1. Glesvær (Merour et al., 2011) CCS Sanger
2. Glesvær (Markussen et al., 2008) CCS Sanger 0,0743/9
3. Glesvær-Tissue-1 Tissue HTS amplicon 0,0407/5 0,1146/14
4. Glesvær-Tissue-2 Tissue HTS amplicon 0,0329/4 0,1067/13 0,0083/1
5. Glesvær-CCS-1 CCS HTS amplicon 0,0169/2 0,0907/11 0,0247/3 0,0169/2
6. Glesvær-CCS-2 CCS HTS amplicon 0,0169/2 0,0907/11 0,0247/3 0,0169/2 0/0
7. Glesvær-CCS-3 CCS HTS amplicon 0,0169/2 0,0907/11 0,0247/3 0,0169/2 0,0004/0 0,0004/0

*Patristic distance was extracted from a phylogenetic tree generated in IQtree with a transversion evolutionary model.