Table 2.
ISAV strains that were sequenced with the whole genome amplicon method.
| Sample | Strain | Farm | Raw PE reads | QCed merged reads | % Survived | Average sequencing depth | Consensus length (bp) | Cluster |
|---|---|---|---|---|---|---|---|---|
| 1 | NO/Lofoten/NVI-70-16183/2013 | Oterholmen | 125,835 | 94,461 | 75.1 | 2,503 | 12,039 | 1 |
| 2 | NO/Lofoten/NVI-70-18141/2013 | Heldalen | 132,830 | 102,038 | 76.8 | 2,704 | 12,390 | 1 |
| 3 | NO/Vesteraalen/NVI-70-9227/2013 | Bonhammaren | 415,193 | 206,730 | 49.8 | 5,506 | 12,330 | 3 |
| 4 | NO/Vesteraalen/NVI-70-9314/2013 | Hysjorda | 321,659 | 182,672 | 56.8 | 4,865 | 12,350 | NA |
| 5 | NO/Vesteraalen/NVI-70-1763/2014 | Skatleia | 123,939 | 93,830 | 75.7 | 2,484 | 12,350 | NA |
| 6 | NO/Vesteraalen/NVI-70-1959/2014 | Vedvika | 144,582 | 111,221 | 76.9 | 2,944 | 12,323 | 3 |
| 7 | NO/Lofoten/NVI-70-2774/2014 | Vaatvika | 212,795 | 159,068 | 74.8 | 4,222 | 12,345 | 1 |
| 8 | NO/Lofoten/NVI-70-3153/2014 | Finnkjerka | 202,561 | 149,236 | 73.7 | 3,954 | 12,353 | 1 |
| 9 | NO/Lofoten/NVI-70-232/2015 | Gamskjaeran | 148,260 | 120,584 | 81.3 | 3,176 | 12,365 | 1 |
| 10 | NO/Lofoten/NVI-70-489/2015 | Korsnes | 180,068 | 134,254 | 74.6 | 3,554 | 12,381 | 1 |
| 11 | NO/Vesteraalen/NVI-70-545/2015 | Jurneset | 572,171 | 189,943 | 33.2 | 5,055 | 12,387 | 2 |
| 12 | NO/Vesteraalen/NVI-70-785/2015 | Hoydalsvika | 526,864 | 203,368 | 38.6 | 5,405 | 12,372 | 2 |