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. 2024 Apr 11;13:e85964. doi: 10.7554/eLife.85964

Figure 1. Satins upregulates the expression of Jmjd3 in macrophages through NF-κB.

(A) Statins activate NF-κB pathways in RAW 264.7 cells. (a) Heatmap of differentially expressed genes with or without statin (lovastatin, 7 + 200 µM mevalonate; 2 days). (b) Pathways identified by gene set enrichment analysis (GSEA) of differentially expressed genes in (a). (c) The details of most highly represented pathway, TNFA signaling vis NF-κB. (B) Methyl-β-cyclodextrin (MCD) activate NF-κB pathways in RAW 264.7 cells. (a) Heatmap of differentially expressed genes with or without MCD (5 mM, 1 hr). (b) Pathways identified by GSEA of differentially expressed genes in (a). (c) The details of most highly represented pathway, TNFA signaling vis NF-κB. (C) Statins and MCD upregulate Jmjd3 in RAW 264.7 cells. (a) Reverse transcriptase quantitative PCR (RT-qPCR) of genes with or without MCD (5 mM; 1 hr). (b) Jmjd3 gene expression in MCD- or statin-treated RAW 264.7 macrophages. (c) Effect of NF-κB inhibitors, MG-132 (5 µM) and BAY11-7082 (10 µM) on Jmjd3 expression in MCD-treated RAW macrophages. (d) Western blotting of JMJD3 protein expression and (e) levels of H3K27Me3 in macrophages treated with 5 mM MCD (1 hr). The pCREB was used as internal control for cholesterol depletion and actin a loading control. Original blots are in source data. (D) Statin/MCD upregulates Jmjd3 in bone marrow-derived macrophages (BMDMs). (a) Jmjd3 gene expression in statin-treated BMDMs (10 µM pravastatin + 200 µM mevalonate; 2 days). (b) Effect of NF-κB inhibitors, MG-132 [5 µM] and BAY11-7082 [10 µM], on Jmjd3 expression in MCD-treated BMDMs. (c) Jmjd3 expression in cholesterol repletes MCD-treated macrophages. Graphs are representative of 3 independent experiments with 3 replicates per condition and are presented as means ± standard deviation (SD). Statistical analysis was performed using unpaired, two-tailed Student’s t-test. An asterisk (*) or double asterisks (**) indicate a significant difference with p < 0.05 and p < 0.001, respectively. A hashtag (#) indicates a significant difference between MCD without or with inhibitors, p < 0.05.

Figure 1—source data 1. Original scanned films of western blots for Figure 1C,d.
Figure 1—source data 2. Original scanned films of western blots for Figure 1C,e.

Figure 1.

Figure 1—figure supplement 1. Cellular cholesterol contents regulate NF-κB pathway.

Figure 1—figure supplement 1.

RAW macrophages were treated with methyl-β-cyclodextrin (MCD) or statins, and RNA-seq was performed as in Figure 1. TF regulatory pathways of activated genes were analyzed using Metascape; top TFs employed by either lovastatin (A) (7 + 200 µM mevalonate) or MCD (B) (5 mM, 1 hr). The genes downregulated by statin is analyzed in (C). No TF is identified in MCD downregulated genes.
Figure 1—figure supplement 2. The expression of Jmjd3 activated by methyl-β-cyclodextrin (MCD) requires NF-κB activity.

Figure 1—figure supplement 2.

Effect of NF-κB inhibitors, JSH23 (10 µM) and SC514 (10 µM), on Jmjd3 expression in MCD-treated RAW macrophages. Graphs are representative of 3 independent experiments with 3 replicates per condition and are presented as means ± standard deviation (SD). Statistical analysis was performed using unpaired, two-tailed Student’s t-test. Double asterisks (**) indicates a significant difference p<0.001.
Figure 1—figure supplement 3. Levels of H3K27Me3 are decreased in macrophages treated with statin or methyl-β-cyclodextrin (MCD) (lovastatin, 7 + 200 µM mevalonate; 2 days) or MCD (5 mM, 1 hr).

Figure 1—figure supplement 3.

The pCREB was used as internal control for cholesterol depletion and actin a loading control. Original blots are in source data.
Figure 1—figure supplement 3—source data 1. Original scanned films of western blots for Figure 1—figure supplement 3.