Table 2.
Comparison of assembly statistics between MetaCompass with Default Database and Reduced Database, including number of reference genomes assembled and average number of references assembled per cluster.
| Body site | Sample | Number of reads | Sample Richness | # references default database | # references reduced database | Runtime default database | Runtime reduced database |
|---|---|---|---|---|---|---|---|
| tongue dorsum | SRR514250 | 226,602,332 | 133 | 211 | 36 | 16:29:48 | 05:24:49 |
| buccal mucosa | SRR513436 | 33,183,142 | 154 | 52 | 38 | 01:09:50 | 01:15:52 |
| posterior fornix | SRR513147 | 7,038,812 | 30 | 32 | 6 | 00:21:02 | 00:07:48 |
| posterior fornix | SRR628270 | 2,713,906 | 12 | 4 | 5 | 00:07:02 | 00:03:31 |
| supragingival plaque | SRR514844 | 112,950,078 | 126 | 115 | 45 | 06:50:27 | 03:16:16 |
| stool | SRR514206 | 171,825,210 | 48 | 104 | 14 | 07:56:40 | 02:37:06 |