TABLE 2.
Primer sequences, repeat motifs, approximate fragment lengths, melting temperatures, GC content, number of observed alleles and polymorphic information content (PIC) in Abies grandis for 17 introduced polymorphic primer pairs.
Primer | Primer sequence (5′‐3′) | Repeat motif | Fragment length | Tm (°C) | GC content (%) | Observed alleles | PIC |
---|---|---|---|---|---|---|---|
AGcp01‐F | TTCCAACCCCAAGTCTGGTC | C(12) | 202 | 59.52 | 55 | 4 | 0.200 |
AGcp01‐R | GGATCGGAAATTGCATAAGCCTC | 60.06 | 48 | ||||
AGcp02‐F | AAGTAGCTCCTGGATGGGGA | A(18) | 309 | 59.66 | 55 | 4 | 0.439 |
AGcp02‐R | TTTCAACAAGTCGCACACCC | 59.26 | 50 | ||||
AGcp03‐F | TCACACTGCTTTTCGGAGGG | T(17) | 124 | 60.25 | 55 | 2 | 0.699 |
AGcp03‐F | TCGTGAAGCGAGAAAGGTGT | 59.61 | 50 | ||||
AGcp04‐F | TCATTGGGTTCYTTGGRCCTT | G(12) | 214 | 60.13 | 48 | 3 | 0.207 |
AGcp04‐R | TTGCCTCTCCTGATGGTTGG | 59.67 | 55 | ||||
AGcp05‐F | TCGATCCATTTCCACCGGTAT | T(15) | 154 | 58.96 | 48 | 5 | 0.419 |
AGcp05‐R | TCCGATCTGAATTACGGAAACCT | 59.55 | 43 | ||||
AGcp06‐F | TGGACCATGAAAATGAAAGAATGGA | A(16) | 205 | 59.22 | 36 | 5 | 0.634 |
AGcp06‐R | TGGGTAAGTCTTAGGACCCG | 58.14 | 55 | ||||
AGcp09‐F | ACCTCAGCTATGTCCCTCGT | A(11) | 201 | 60.03 | 55 | 3 | 0.338 |
AGcp09‐R | CGATCGGTCGCCAGGATAAA | 59.97 | 55 | ||||
AGcp11‐F | GGGAAGAAAGAACATTTGGAAAACA | T(16) | 205 | 58.65 | 36 | 6 | 0.674 |
AGcp11‐R | ACGTAATCTCCGGGATCCTTATT | 58.84 | 43 | ||||
AGcp15‐F | ACCATTCAACCATACCCGCA | AT(7) | 173 | 59.67 | 50 | 3 | 0.223 |
AGcp15‐R | AATGAAGGTGCTCAAGGGAGG | 59.99 | 52 | ||||
AGcp18‐F | TTGGTACGGCACTTGAGAGA | T(17) | 169 | 58.67 | 50 | 7 | 0.510 |
AGcp18‐R | AGTGACATCAATAACTGGTCCAA | 57.76 | 39 | ||||
AGcp19‐F | CATGCCAACCACTCAACTCAC | A(13)T(5) | 230 | 59.73 | 52 | 3 | 0.201 |
AGcp19‐R | TGACGTGGTGGAAGTCATCAG | 60 | 52 | ||||
AGcp20‐F | GTGTTCCTCTATCCGTGGAGT | T(20) | 207 | 58.9 | 52 | 8 | 0.569 |
AGcp20‐R | GAGGCGTACATCTCTTCTGGT | 59.25 | 52 | ||||
AGcp21‐F | GCTTACCCTACATGGTCGAGA | A(19) | 123 | 58.97 | 52 | 8 | 0.803 |
AGcp21‐R | TTCCTGGTATTGTCCAAGAATAGT | 57.36 | 38 | ||||
AGcp22‐F | CTGCTGGATGCAGAGGAACT | T(14) | 161 | 59.75 | 55 | 3 | 0.493 |
AGcp22‐R | TCCGATGGATTGTTACTGTGTATTG | 59.18 | 40 | ||||
AGcp23‐F | TGGATTCGGTCCATTGATTGC | T(9)‐A‐C(9)T(7) | 178 | 58.98 | 48 | 8 | 0.780 |
AGcp23‐R | CCATATTAGTTGACACRAKMTTTCA | 57.23 | 36 | ||||
AGcp24‐F | GACCGATCATTGCGGGTACA | T(16) | 334 | 60.18 | 55 | 6 | 0.510 |
AGcp24‐R | ATCCTCATGGAGGTGGGGAA | 59.95 | 55 | ||||
AGcp25‐F | ACCCTTTTCCGAGGGGTAGT | T(23) | 351 | 60.18 | 55 | 10 | 0.773 |
AGcp25‐R | ACCTCATACGGCTCCTCCTT | 60.03 | 55 |