Table 2. SNPs significantly associated with ovarian development in Coilia nasus.
| SNP ID | LG | Position | Allele | MAF (%) | Beta | P-value | Location |
| SNP ID, combination of chromosome number and physical location of SNP on reference genome; LG, linkage group; Allele, alternative/reference; MAF, minor allele frequency; Beta, effect size of each SNP; SNP ID is shown as LG-position. | |||||||
| rs.3-29957384 | 3 | 29957384 | T/C | 46.9 | 0.30 | 1.27e–06 | Intronic (fgf12b) |
| rs.8-28521866 | 8 | 28521866 | A/G | 8.4 | 0.58 | 7.32e–07 | Intronic (wdfy3) |
| rs.12-35213305 | 12 | 35213305 | T/A | 13.3 | 0.45 | 4.05e–07 | Intergenic |
| rs.16-1482918 | 16 | 1482918 | G/A | 8.6 | 0.47 | 5.84e–07 | Intronic (dcn) |
| rs.18-28290664 | 18 | 28290664 | G/T | 11.1 | 0.48 | 4.72e–07 | Intergenic |
| rs.21-25913866 | 21 | 25913866 | T/A | 13.2 | 0.45 | 1.08e–06 | Intergenic |
| rs.21-26311407 | 21 | 26311407 | C/T | 9.2 | 0.53 | 1.74e–07 | Intergenic |
| rs.21-32018434 | 21 | 32018434 | A/G | 8.5 | 0.54 | 3.38e–07 | Intronic (uncharacterized) |
| rs.21-35133061 | 21 | 35133061 | G/C | 7.1 | 0.59 | 1.26e–06 | Intergenic |
| rs.21-35622278 | 21 | 35622278 | A/T | 11 | 0.44 | 1.08e–06 | Intronic (cpne5a) |
| rs.21-35622426 | 21 | 35622426 | T/C | 10.3 | 0.46 | 5.62e–07 | Intronic (cpne5a) |
| rs.21-35630806 | 21 | 35630806 | A/G | 18 | 0.37 | 1.06e–06 | Intronic (cpne5a) |
| rs.21-35635714 | 21 | 35635714 | A/T | 23.2 | 0.34 | 3.49e–07 | Intronic (cpne5a) |
| rs.21-35639272 | 21 | 35639272 | C/T | 17.2 | 0.44 | 1.92e–07 | Intronic (cpne5a) |
| rs.21-35646100 | 21 | 35646100 | A/T | 14.1 | 0.42 | 1.09e–06 | Intronic (cpne5a) |
| rs.21-35646108 | 21 | 35646108 | A/T | 14.1 | 0.42 | 1.09e–06 | Intronic (cpne5a) |
| rs.21-35652249 | 21 | 35652249 | T/C | 18 | 0.37 | 1.05e–06 | Intronic (cpne5a) |
| rs.21-35656228 | 21 | 35656228 | A/C | 18.2 | 0.38 | 4.82e–07 | Intronic (cpne5a) |
| rs.21-35658231 | 21 | 35658231 | A/G | 17 | 0.38 | 9.22e–07 | Intronic (cpne5a) |
| rs.21-35659819 | 21 | 35659819 | T/C | 17.7 | 0.39 | 3.70e–07 | Intronic (cpne5a) |
| rs.21-35664850 | 21 | 35664850 | T/A | 18 | 0.37 | 1.04e–06 | Intronic (cpne5a) |
| rs.21-35664851 | 21 | 35664851 | T/C | 18 | 0.37 | 1.04e–06 | Intronic (cpne5a) |
| rs.21-35680954 | 21 | 35680954 | T/C | 17.3 | 0.36 | 9.50e–07 | Intronic (cpne5a) |
| rs.21-35682653 | 21 | 35682653 | A/G | 18.5 | 0.38 | 1.89e–07 | Intronic (cpne5a) |
| rs.21-35684130 | 21 | 35684130 | T/C | 17.6 | 0.37 | 8.96e–07 | Intronic (cpne5a) |
| rs.21-35691138 | 21 | 35691138 | A/G | 15.6 | 0.41 | 8.47e–08 | Intronic (cpne5a) |
| rs.21-35697505 | 21 | 35697505 | C/T | 17 | 0.38 | 6.81e–07 | Intronic (cpne5a) |
| rs.21-35697513 | 21 | 35697513 | C/T | 17.9 | 0.39 | 5.71e–07 | Intronic (cpne5a) |
| rs.21-35701504 | 21 | 35701504 | A/C | 16.3 | 0.40 | 3.45e–07 | Intronic (cpne5a) |
| rs.21-35707111 | 21 | 35707111 | G/A | 16.5 | 0.40 | 5.18e–07 | Intronic (cpne5a) |
| rs.21-35707919 | 21 | 35707919 | A/G | 17 | 0.39 | 8.97e–07 | Intronic (cpne5a) |
| rs.21-35708107 | 21 | 35708107 | A/G | 16.3 | 0.39 | 4.06e–07 | Intronic (cpne5a) |
| rs.21-35708121 | 21 | 35708121 | T/G | 16.3 | 0.39 | 4.05e–07 | Intronic (cpne5a) |
| rs.21-35708583 | 21 | 35708583 | C/A | 18.5 | 0.37 | 1.30e–07 | Intronic (cpne5a) |
| rs.21-35708584 | 21 | 35708584 | C/A | 18.5 | 0.37 | 1.30e–07 | Intronic (cpne5a) |
| rs.21-35708649 | 21 | 35708649 | T/C | 17.8 | 0.37 | 1.46e–07 | Intronic (cpne5a) |
| rs.21-35726606 | 21 | 35726606 | G/A | 19.7 | 0.36 | 1.21e–06 | Intergenic |
| rs.21-35728574 | 21 | 35728574 | T/C | 20.7 | 0.37 | 8.67e–07 | Intergenic |
| rs.21-35735318 | 21 | 35735318 | C/A | 21.8 | 0.32 | 1.10e–06 | Intronic (cpne5b) |