Table 5. Final candidate genes associated with ovarian development in Coilia nasus.
| SNP ID | Candidate gene | LG | Start | End | Log2FC | P-value | Description | Tissue | Group |
| SNP ID, combination of chromosome number and physical location of SNP on reference genome; LG, linkage group; Start and End, physical location of start and end of gene in the reference genome. Group, RNA-seq based on large body size, small body size, and all individuals. FC: Fold change. | |||||||||
| rs.3-29957384 | il1rap | 3 | 29873857 | 29878206 | 1.164334 | 0.0344064 | Interleukin-1 receptor accessory protein | Ovary | All |
| il1rap | 3 | 29908272 | 29936257 | 1.2734838 | 0.0378355 | Interleukin-1 receptor accessory protein | Ovary | All | |
| rs.8-28721866 | wdfy3 | 8 | 28549826 | 28582793 | 1.1265539 | 0.031702 | WD repeat and FYVE domain containing 3 | Brain | Small |
| rs.12-35213305 | tmem198b | 12 | 35233409 | 35236894 | 1.3908257 | 0.047486 | Transmembrane protein 198b | Ovary | All |
| tuba1a | 12 | 35118270 | 35138574 | 1.1303117 | 0.0428253 | Tubulin alpha chain | Ovary | Small | |
| rs.16-1482918 | lum | 16 | 1518399 | 1519729 | -3.011686 | 6.10E-05 | Lumican | Ovary | All |
| dcn | 16 | 1482217 | 1503407 | -1.613559 | 0.0050068 | Decorin | Ovary | Small | |
| epyc | 16 | 1547695 | 1563608 | -1.794637 | 0.0142083 | Epiphycan | Brain | All | |
| rs.21-26311407 | bsna | 21 | 26210330 | 26260627 | -1.250373 | 0.0033617 | Bassoon presynaptic cytomatrix protein a | Ovary | Large |
| rs.21-32088434 | srxn1 | 21 | 32131172 | 32132570 | -2.010689 | 0.0004854 | Sulfiredoxin-1 | Ovary | Large |
| uncharacterized gene | 21 | 32010067 | 32044683 | 1.6457006 | 0.00017 | Uncharacterized protein | Ovary | All | |
| rs.21-35133061 | adhfe1 | 21 | 35222491 | 35245287 | 1.5221476 | 0.0156807 | Alcohol dehydrogenase iron containing 1 | Ovary | All |