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. 2000 May;74(9):3948–3952. doi: 10.1128/jvi.74.9.3948-3952.2000

TABLE 1.

Amino acid sequence of TCR β-chain junction of T-cell clones derived from three HCMV+ donors and recognizing either pp65 or IE1a

Donor HLA restriction Amino acid position in:
TCR β-chain sequence
No. of clones
IE1 pp65 CDR3
A A1 353–375 Vβ1S1 CAS SPRGFDAGGYWLD LRF Jβ1.2 1
Total 1
B A2 485–507 Vβ6S4A1 CAS SYGQNPLNTE AFF Jβ1.1 1
B A2 485–507 Vβ14S1 CAS SLEGYTE AFF Jβ1.1 1
Total 2
C A2 309–331 Vβ1S1 CAS SVDGTGGALGNT IYF Jβ1.3 1
C A2 309–331 Vβ4S1 CSV EXSPPGEEWWLT LRF Jβ1.6 1
C A2 309–331 Vβ210S1 CAW SWGDSTNSP LHF Jβ1.6 19
C A2 309–331 Vβ21S3 CAS SLVGGTGSVSY QFF Jβ2.1 1
Total 22
C B18 188–210, 199–221 Vβ3S1 CAS SLLMATNEK LFF Jβ1.4 1
C B18 188–210, 199–221 Vβ6S5 CAS SYRANYE QYF Jβ2.7 2
C B18 188–210, 199–221 Vβ9S2 CAS SQAVASGGGRSE QFF Jβ2.1 1
C B18 188–210, 199–221 Vβ22S1 CAS VTGSTDT QYF Jβ2.3 7
C B18 188–210, 199–221 Vβ22S1 CAS SDGTAYE QYF Jβ2.7 10
C B18 265–287 Vβ7S1 CAS SLARNQP QHF Jβ1.5 1
C B18 265–287 Vβ17S1 CAS GGADMKTE AFF Jβ1.1 1
C B18 375–397 Vβ2S1 CSA NPDWGLQLWLH LRF Jβ2.1 1
C B18 375–397 Vβ6S4 CAS SPGGGKET QYF Jβ2.5 1
C B18 ND Vβ6S4 CAS RLRGSSSYNE QFF Jβ2.1 1
Total 26
a

The recognized epitope and restricting HLA molecule are given for each clone. The total number of anti-pp65 or IE1 T-cell clones restricted by a given HLA context for each donor is in boldface. ND, not determined.