TABLE 1.
Amino acid sequence of TCR β-chain junction of T-cell clones derived from three HCMV+ donors and recognizing either pp65 or IE1a
| Donor | HLA restriction | Amino acid position in:
|
TCR β-chain sequence
|
No. of clones | |||||
|---|---|---|---|---|---|---|---|---|---|
| IE1 | pp65 | Vβ | CDR3 | Jβ | |||||
| A | A1 | 353–375 | Vβ1S1 | CAS | SPRGFDAGGYWLD | LRF | Jβ1.2 | 1 | |
| Total | 1 | ||||||||
| B | A2 | 485–507 | Vβ6S4A1 | CAS | SYGQNPLNTE | AFF | Jβ1.1 | 1 | |
| B | A2 | 485–507 | Vβ14S1 | CAS | SLEGYTE | AFF | Jβ1.1 | 1 | |
| Total | 2 | ||||||||
| C | A2 | 309–331 | Vβ1S1 | CAS | SVDGTGGALGNT | IYF | Jβ1.3 | 1 | |
| C | A2 | 309–331 | Vβ4S1 | CSV | EXSPPGEEWWLT | LRF | Jβ1.6 | 1 | |
| C | A2 | 309–331 | Vβ210S1 | CAW | SWGDSTNSP | LHF | Jβ1.6 | 19 | |
| C | A2 | 309–331 | Vβ21S3 | CAS | SLVGGTGSVSY | QFF | Jβ2.1 | 1 | |
| Total | 22 | ||||||||
| C | B18 | 188–210, 199–221 | Vβ3S1 | CAS | SLLMATNEK | LFF | Jβ1.4 | 1 | |
| C | B18 | 188–210, 199–221 | Vβ6S5 | CAS | SYRANYE | QYF | Jβ2.7 | 2 | |
| C | B18 | 188–210, 199–221 | Vβ9S2 | CAS | SQAVASGGGRSE | QFF | Jβ2.1 | 1 | |
| C | B18 | 188–210, 199–221 | Vβ22S1 | CAS | VTGSTDT | QYF | Jβ2.3 | 7 | |
| C | B18 | 188–210, 199–221 | Vβ22S1 | CAS | SDGTAYE | QYF | Jβ2.7 | 10 | |
| C | B18 | 265–287 | Vβ7S1 | CAS | SLARNQP | QHF | Jβ1.5 | 1 | |
| C | B18 | 265–287 | Vβ17S1 | CAS | GGADMKTE | AFF | Jβ1.1 | 1 | |
| C | B18 | 375–397 | Vβ2S1 | CSA | NPDWGLQLWLH | LRF | Jβ2.1 | 1 | |
| C | B18 | 375–397 | Vβ6S4 | CAS | SPGGGKET | QYF | Jβ2.5 | 1 | |
| C | B18 | ND | Vβ6S4 | CAS | RLRGSSSYNE | QFF | Jβ2.1 | 1 | |
| Total | 26 | ||||||||
The recognized epitope and restricting HLA molecule are given for each clone. The total number of anti-pp65 or IE1 T-cell clones restricted by a given HLA context for each donor is in boldface. ND, not determined.