Table 1. Genome data for Merodon equestris, idMerEque2.1.
| Project accession data | ||||
|---|---|---|---|---|
| Assembly identifier | idMerEque2.1 | |||
| Species | Merodon equestris | |||
| Specimen | idMerEque2 | |||
| NCBI taxonomy ID | 511117 | |||
| BioProject | PRJEB61688 | |||
| BioSample ID | SAMEA112221777 | |||
| Isolate information | idMerEque2, female: thorax (DNA sequencing)
idMerEque1: head and thorax (Hi-C sequencing) idMerEque3: abdomen (RNA sequencing) |
|||
| Assembly metrics * | Benchmark | |||
| Consensus quality (QV) | 65.8 | ≥ 50 | ||
| k-mer completeness | 100.0% | ≥ 95% | ||
| BUSCO ** | C:96.4%[S:95.4%,D:1.0%],
F:1.0%,M:2.6%,n:3,285 |
C ≥ 95% | ||
| Percentage of assembly
mapped to chromosomes |
92.4% | ≥ 95% | ||
| Sex chromosomes | Not identified | localised homologous pairs | ||
| Organelles | Mitochondrial genome: 15.95 kb | complete single alleles | ||
| Raw data accessions | ||||
| PacificBiosciences SEQUEL II | ERR11279095 | |||
| Hi-C Illumina | ERR11439617 | |||
| PolyA RNA-Seq Illumina | ERR11837489 | |||
| Genome assembly | ||||
| Assembly accession | GCA_958301585.1 | |||
| Accession of alternate haplotype | GCA_958450385.1 | |||
| Span (Mb) | 873.0 | |||
| Number of contigs | 463 | |||
| Contig N50 length (Mb) | 5.6 | |||
| Number of scaffolds | 271 | |||
| Scaffold N50 length (Mb) | 129.8 | |||
| Longest scaffold (Mb) | 262.8 | |||
* Assembly metric benchmarks are adapted from column VGP-2020 of “Table 1: Proposed standards and metrics for defining genome assembly quality” from ( Rhie et al., 2021).
** BUSCO scores based on the diptera_odb10 BUSCO set using version 5.3.2. C = complete [S = single copy, D = duplicated], F = fragmented, M = missing, n = number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/idMerEque2_1/dataset/idMerEque2_1/busco.