TABLE 2.
Genes located in genomic regions showing evidence of selection simultaneously identified by two methods in Hu sheep.
| Chr | Start | End | Methods | Candidate genes |
|---|---|---|---|---|
| OAR1 | 25000001 | 25500001 | iHS, ROH | FAF1, CDKN2C , TRNAY‐GUA, TTC39A, C1H1orf185, RNF11 |
| OAR3 | 93750001 | 94250001 | iHS, ROH | EXOC6B |
| OAR3 | 104750001 | 105500001 | iHS, ROH | BCL2L11 , ACOXL |
| OAR4 | 68250001 | 69002893 | iHS, ROH | HIBADH , TAX1BP1, JAZF1, EVX1, HOXA1 , HOXA2 , HOXA3 , HOXA4 , HOXA5 , HOXA9 , HOXA10 , HOXA11 , HOXA13 |
| OAR6 | 24500001 | 25000001 | iHS, CLR | TRNAC‐GCA, H2AFZ , LAMTOR3, DDIT4L, DAPP1, DNAJB14 |
| OAR6 | 29250001 | 30022764 | iHS, ROH | UNC5C , BMPR1B , PDLIM5 |
| OAR7 | 35000001 | 35500001 | iHS, ROH | CDAN1, CCNDBP1, EPB42, STARD9 , TTBK2, UBR1, TMEM62 |
| OAR10 | 36250001 | 36831220 | iHS, ROH | GJA3, TRNAG‐UCC, GJB2, ZMYM2, PSPC1 , PARP4, CENPJ, MPHOSPH8, RNF17 , ATP12A |
| OAR13 | 51250001 | 51750001 | iHS, ROH | AVP , OXT , MRPS26 , GNRH2 , TMEM239, C13H20orf141, UBOX5, FASTKD5, VPS16, PCED1A, CPXM1, EBF4, PTPRA |
| OAR13 | 52750001 | 53456146 | iHS, ROH | TRNAC‐GCA, GINS1, PCMTD2, MYT1, OPRL1, TCEA2 , UCKL1, DNAJC5, TPD52L2, ZBTB46, PRPF6, NPBWR2 , LKAAEAR1, RGS19, SOX18 , SAMD10, ZNF512B, ABHD16B , LIME1, ARFRP1, TNFRSF6B, SRMS, PPDPF, EEF1A2, ZGPAT , RTEL1, STMN3 , C13H20orf195, PTK6, KCNQ2, GMEB2 |
Note: The genes in black and bald indicated associated with reproduction traits.