Table 2.

Summary of results from our genome-wide association study of SCAN Suicide Severity (6.011) and SCAN Suicidality (SSU) scores.

Phenotype	SNP	Gene	eQTLa	CHR	BP	Z-score	p	Direction
6.011	rs9654143	STPG2	STPG2/RAP1GDS1	4	98,689,152	−5.054	4.33E − 07	–––
6.011	rs9647614		MCUR1	6	13,843,271	4.892	9.98E − 07	+++
6.011	rs61246028		LINC00400	13	43,756,955	4.703	2.57E − 06	+++
6.011	rs79099900	RASSF2		20	4,804,781	−4.692	2.71E − 06	–––
6.011	rs74961332	POFUT2	POFUT2	21	46,702,822	4.779	1.76E − 06	+–+
SSU	rs9654143	STPG2	STPG2/RAP1GDS1	4	98,689,152	−5.054	4.33E − 07	+++
SSU	rs9647614			6	13,843,271	4.892	9.98E – 07	–––
SSU	rs61246028		LINC00400	13	43,756,955	4.703	2.57E − 06	+++
SSU	rs77916371	PTPN21		14	88,969,691	−4.522	6.13E − 06	–––
SSU	rs11071625	LOC107984782		15	61,967,903	−4.562	5.07E − 06	–––
	Gene Name	Gene ID	Number of SNPs	CHR	N	ZSTAT	p	NPERM
6.011	ACE	1636	61	17	3506	3.7384	9.26E − 05	1000
6.011	GFRA1	2674	666	10	3506	4.1658	1.55E − 05	1000
6.011	STPG2	285555	1887	4	3506	3.9027	4.76E − 05	1000
6.011	IQCA1	79781	373	2	3506	4.1165	1.92E − 05	1000
SSU	GFRA1	2674	666	10	3506	3.9624	3.71E − 05	1000
SSU	STPG2	285555	1887	4	3506	3.8058	7.07E − 05	1000
SSU	DNASE2B	58511	92	1	3506	3.7905	7.52E − 05	1000

The upper panel shows the top five SNPs for each phenotype, and the bottom panel shows the top suggestive gene-based findings for these phenotypes.

^aAccording to GTEx portal.