TABLE 3.
Exon | Position (nucleotide no.)
|
Sequencesb
|
||
---|---|---|---|---|
cDNA | Genomica | SA | SD | |
1 | 1–170 | 142655*–142486* | ACG/(GT)GAGT | |
2 | 171–418 | 139002–138755 | AAATCTCTTCGC(AG)/A | ACA/(GT)AAGT |
3 | 419–700 | 138660–138379 | TTAATTCTTCTA(AG)/G | ATG/(GT)AAGC |
4 | 701–1057 | 138305–137949 | TACCCGCTTATT(AG)/T | AGT/(GT)AAGT |
5 | 1058–1135 | 137828–137751 | ATTTTTTTTTTT(AG)/A | AAT/(GT)AAGA |
6 | 1136–1243 | 137674–137567 | TCGTTTAGTAAC(AG)/G | CAG/(GT)AAAT |
7 | 1244–1357 | 137496–137383 | CTTCTTCATCCT(AG)/A | TTG/(GT)AATT |
8 | 1358–1676 [poly(A)c] | 137301–136980 | TTTTTTCATACC(AG)/C |
All positions refer to the coding DNA strand of the HHV-7JI genome (29). The position that maps to the DR elements at the left and right viral genomic termini is indicated by an asterisk; map units are provided for the location most proximal to the other elements of the cDNA (i.e., DRR; map units within DRL correspond to positions 3608 to 3439).
SA and SD refer to the splice acceptor and splice donor sequences, respectively, present within the HHV-7JI genome. Splice consensus motifs are indicated in parentheses. The slash indicates the position at which mRNA splicing occurs (as determined by sequence analysis of the cDNA clone).
Poly(A) indicates the location of the oligo(dT) tract in the cDNA clone. This corresponds to the putative 3′ end of the corresponding mRNA transcript (i.e., the 3′ poly(A) tail).