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. 2000 May;74(10):4530–4540. doi: 10.1128/jvi.74.10.4530-4540.2000

TABLE 3.

Exon positions within the gene that encodes gp65 in the cDNA and the HHV-7JI genome sequences

Exon Position (nucleotide no.)
Sequencesb
cDNA Genomica SA SD
1 1–170 142655*–142486* ACG/(GT)GAGT
2 171–418 139002–138755 AAATCTCTTCGC(AG)/A ACA/(GT)AAGT
3 419–700 138660–138379 TTAATTCTTCTA(AG)/G ATG/(GT)AAGC
4 701–1057 138305–137949 TACCCGCTTATT(AG)/T AGT/(GT)AAGT
5 1058–1135 137828–137751 ATTTTTTTTTTT(AG)/A AAT/(GT)AAGA
6 1136–1243 137674–137567 TCGTTTAGTAAC(AG)/G CAG/(GT)AAAT
7 1244–1357 137496–137383 CTTCTTCATCCT(AG)/A TTG/(GT)AATT
8 1358–1676 [poly(A)c] 137301–136980 TTTTTTCATACC(AG)/C
a

All positions refer to the coding DNA strand of the HHV-7JI genome (29). The position that maps to the DR elements at the left and right viral genomic termini is indicated by an asterisk; map units are provided for the location most proximal to the other elements of the cDNA (i.e., DRR; map units within DRL correspond to positions 3608 to 3439). 

b

SA and SD refer to the splice acceptor and splice donor sequences, respectively, present within the HHV-7JI genome. Splice consensus motifs are indicated in parentheses. The slash indicates the position at which mRNA splicing occurs (as determined by sequence analysis of the cDNA clone). 

c

Poly(A) indicates the location of the oligo(dT) tract in the cDNA clone. This corresponds to the putative 3′ end of the corresponding mRNA transcript (i.e., the 3′ poly(A) tail).