Skip to main content
. Author manuscript; available in PMC: 2024 Sep 7.
Published in final edited form as: Mol Cell. 2023 Aug 24;83(17):3123–3139.e8. doi: 10.1016/j.molcel.2023.07.031

Key resources table

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
CCT1 Santa Cruz Biotechnology Cat # sc-374088 RRID:AB_10918262
CCT1 Abcam Cat# ab240903 RRID:AB_2920800
CCT2 Abcam Cat # ab92746 RRID:AB_10565196
CCT2 (rabbit) 81 N/A
CCT3 Abcam Cat # ab106932 RRID:AB_10865346
CCT3 Santa Cruz Biotechnology Cat # sc-271336 RRID:AB_10610107
CCT4 Santa Cruz Biotechnology Cat # sc-137092 RRID:AB_2073768
CCT5 Abcam Cat # ab129016 RRID:AB_11154964
CCT5 (rabbit) 81 N/A
CCT6 Santa Cruz Biotechnology Cat # sc-514466 RRID:AB_11154964
CCT7 Santa Cruz Biotechnology Cat # sc-271951 RRID:AB_10709576
CCT8 Santa Cruz Biotechnology Cat # sc-377261 RRID:AB_2917991
IRDye 680RD Donkey anti-rabbit IgG LI-COR Biosciences Cat# 926-68073 RRID:AB_10954442
IRDye 800CW Donkey anti-mouse IgG LI-COR Biosciences Cat# 926-32212 RRID:AB_621847
IRDye 800CW Donkey anti-Goat IgG (H + L) LI-COR Biosciences Cat# 926-32214 RRID:AB_621846
IRDye 800CW Goat anti-Rat IgG (H + L) LI-COR Biosciences Cat# 926-32219 RRID:AB_1850025
Peroxidase AffiniPure Donkey Anti-Rabbit IgG (H+L) Jackson Immuno Research Cat# 711-035-152 RRID:AB_10015282
Peroxidase AffiniPure Donkey Anti-Mouse IgG (H+L) Jackson Immuno Research Cat# 715-035-151 RRID:AB_2340771
Peroxidase AffiniPure Donkey Anti-Goat IgG (H+L) Jackson Immuno Research Cat# 705-035-003 RRID:AB_2340390
Anti-GFP-MBP nanobody Modified by MPB addition, this study N/A
Bacterial and virus strains
E. coli strain DH10Bac Thermo Fisher Cat# 10361012
Chemicals, peptides, and recombinant proteins
HCCCT578631 This study N/A
HCCCT1368 This study N/A
HCCCT4257 This study N/A
HCCCT57 This study N/A
TRIC Collier et al., 2021 N/A
DMEM supplemented with glucose Thermo Fisher Scientific Cat# 10566024
Fetal Bovine Serum Thermo Fisher Scientific Cat# 26400044
DharmaFECT #4 transfection reagent DharmaFECT Cat# T-2004-03
DharmaFECT Cell Culture Reagent (DCCR) Thermo Fisher Scientific Cat# B-004500-100
Complete, EDTA-free Protease Inhibitor Cocktail Roche Cat# 4693132001
Lipofectamine 2000 Thermo Fisher Scientific Cat# 11668019
Z-Leu-Leu-Leu-al Sigma-Aldrich Cat# C2211-5MG
Ammonium Chloride Sigma-Aldrich Cat# A9434
Benzonase® Nuclease Sigma-Aldrich Cat# E1014-5KU
Ni Sepharose® High Performance Sigma-Aldrich Cat# GE17-5268-02
Calmodulin Sepharose 4B VWR Cat# 95016-874
Amylose Resin New England Biolabs Cat# E8021S
DSS-H12/D12 Creatie Molecules Inc. Cat# 001S
Adenosine 5’-triphosphate disodium salt hydrate Sigma-Adlrich Cat# A7699
DNaseI Worthington Biochemical Cat# LS006333
DNaseI Sigma-Aldrich Cat# D5025
Critical commercial assays
Quick-RNA miniprep Kit Zymo Research Cat# R1054
iScript cDNA Synthesis Kit Bio-Rad Cat# 1708891
Itaq Universal SYBR assay Bio-Rad Cat# 1708891
[35S] EasyTag express protein labeling mix Perkin Elmer Cat# NEG772002MC
Deposited data
Unprocessed western blot deposited in Mendeley Data This paper DOI: 10.17632/ymrbcv2wrt.1
Unprocessed images of negative stain This paper DOI: 10.17632/ymrbcv2wrt.1
XL-MS raw data in Mendeley Data This paper DOI: 10.17632/ymrbcv2wrt.1
Map of HCCCT578631 This paper EMD-32393
Coordinates of the TRiC in open conformation Gestaut et al. 2022 PDB:7WU7
Experimental models: Cell lines
Hela cells (CCL-2) ATCC CCL-2
SF9 cells Thermo Fisher Scientific 12659-017
High Five cells (Hi5) Invitrogen B85502
Oligonucleotides
Primers used in this study are listed in Table S1 This paper N/A
Recombinant DNA
pFB-Duet CCT7His, CCT5 Gestaut et al., 2019 pDG463
pFB-Duet CCT2, CCT4, Gestaut et al., 2019 pDG443
pFB-Duet CCT6, CCT3 Gestaut et al., 2019 pDG445
pFB-Duet CCT8, CCT1 Gestaut et al., 2019 pDG446
pFB-Duet CCT1CBP, CCT8 Gestaut et al., 2019 pDG518
pFB-Duet CCT1GFP, CCT8 Gestaut et al., 2019 pDG517
pFB-Duet HIS-ACTB This study pYC26
pcDNA3.1 CCT2-Ch C-terminal mCherry (Zhao et al., 2016) pJF1919
pcDNA3.1 CCT4-Ch C-terminal mCherry (Zhao et al., 2016) pJF1921
pcDNA3.1 CCT5-Ch C-terminal mCherry (Zhao et al., 2016) pJF1922
pCMV6 CCT1 Eric Jonasch N/A
pCMV6 CCT2 Eric Jonasch N/A
pCMV6 CCT3 Eric Jonasch N/A
pCMV6 CCT4 Eric Jonasch N/A
pCMV6 CCT5 Eric Jonasch N/A
pCMV6 CCT6 Eric Jonasch N/A
pCMV6 CCT7 Eric Jonasch N/A
pcDNA YFP Addgene #13033
siGENOME Human TCP1 (6950) siRNA - SMARTpool Thermo Scientific M-012749-01-0005
siGENOME Human CCT2 (10576) siRNA - SMARTpool Thermo Scientific M-020107-02-0005
siGENOME Human CCT3 (7203) siRNA - SMARTpool Thermo Scientific M-018339-01-0005
siGENOME Human CCT4 (10575) siRNA - SMARTpool Thermo Scientific M-020147-00-0005
siGENOME Human CCT5 (22948) siRNA - SMARTpool Thermo Scientific M-012797-02-0005
siGENOME Human CCT6A (908) siRNA - SMARTpool Thermo Scientific M-016559-01-0005
siGENOME Human CCT7 (10574) siRNA - SMARTpool Thermo Scientific M-020115-01-0005
siGENOME Human CCT8 (10694) siRNA - SMARTpool Thermo Scientific M-008566-02-0005
siGENOME
Non-Targeting siRNA Pool #2
Thermo Scientific D-001206-14-05
Software and algorithms
ImageJ Schneider et al. 2021 https://imagej.nih.gov/ij/index.html
GraphPad Prism 7.04 & 9.1.2 GraphPad https://www.graphpad.com/scientific-software/prism/
CFX Maestro Manager BioRad https://www.bio-rad.com/en-us/product/cfx-maestro-software-for-cfx-real-time-pcr-instruments?ID=OKZP7E15
Image Studio Lite Li-COR Biosciences https://www.licor.com/bio/image-studio-lite/
Pymol 1.8.6.2 Schrӧdinger https://pymol.org/2/
UniDec v3.1.0 Marty et al., 2015 https://github.com/michaelmarty/UniDec
MaCSED v0.3 Justin Benesch benesch.chem.ox.ac.uk/resources.html
MaxQuant v1.6.14 Tyanova et al., 2016a https://maxquant.net/download_asset/perseus/latest
Perseus v1.6.5 Tyanova et al., 2016b https://maxquant.net/download_asset/perseus/latest
cryosparc2 Punjani et al., 2017 https://cryosparc.com/
RStudio Versi on 1.2.1335 The R foundation https://www.r-project.org/
xQuest Walzthoeni et al., 2012 https://bioinformaticshome.com/tools/proteomics/descriptions/xQuest.html
UCSF ChimeraX Pettersen et al., 2021 https://www.cgl.ucsf.edu/chimerax/