Table 3.
List of genes identified in the plastomes of Dipodium.
| Gene group | Gene name |
|---|---|
| Transfer RNA genes | trnA-UGC* a , trnC-GCA, trnD-GUC d , trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC, trnG-UCC*, trnH-GUG a , trnI-CAU a , trnI-GAU* a , trnK-UUU*, trnL-CAA a , trnL-UAA*, trnL-UAG, trnM-CAU, trnN-GUU a , trnP-UGG, trnQ-UUG, trnR-ACG a , trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GACab, trnV-UAC*, trnW-CCA, trnY-GUA |
| Small subunit of ribosome | rps2, rps3, rps4, rps7 a , rps8, rps11, rps12* a , rps14, rps15, rps16*, rps18, rps19 a |
| Large subunit of ribosome | rpl2* a , rpl14, rpl16*, rpl20, rpl22, rpl23 a , rpl32, rpl33, rpl36 |
| DNA-dependent RNA polymerase | rpoA, rpoB, rpoC1*, rpoC2 |
| Genes for photosynthesis | |
| Subunits of photosynthesis I | psaA, psaB, psaC, psaI, psaJ |
| Subunits of photosynthesis II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ |
| Subunit of Cytochrome b6f | petA, petB*, petD*, petG, petL, petN |
| Subunit of ATP synthase | atpA, atpB, atpE, atpF*, atpH, atpI |
| Subunit of NADH dehydrogenase | ndhA* c , ndhB*ac, ndhC c , ndhD c , ndhE c , ndhF c , ndhG c , ndhH c , ndhI c , ndhJ c , ndhK c |
| Large subunits of RubisCO | rbcL |
| Ribosomal RNA genes | rrn5 a , rrn4.5 a , rrn16 a , rrn23 a |
| Other genes | |
| Maturase | matK |
| Envelope membrane protein | cemA e |
| Subunit of acetyl-CoA carboxylase | accD |
| C-type cytochrome synthesis gene | cssA |
| Protease | clpP* |
| Translation initiation factor IF-1 | infA |
| ycf genes | ycf1, ycf2 a , ycf3*, ycf4 |
a
Duplicated gene.
b
Triplicated gene in D. hamiltonianum, D. interaneum, D. elegantulum, D. stenocheilum 2, and D. ammolithum.
c
Pseudogene or lost.
d
Pseudogene in D. campanulatum 1.
e
Pseudogene in D. aff. roseum 4.
*Intron-containing gene.