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. Author manuscript; available in PMC: 2024 Jun 27.
Published in final edited form as: Nat Neurosci. 2020 Apr 6;23(5):651–663. doi: 10.1038/s41593-020-0614-x

Extended Data Fig. 5: Method for image registration across days.

Extended Data Fig. 5:

a) Field of view of raw endoscopic image (Top) during day 1 (Left) and day 2 (right) in one example animal. Corresponding locations of cells (Bottom) during the same two sessions, as seen in max projection images after motion correction. Representative of images from n = 4 mice.

b) Expanded view of aligned cell locations on day 1 and day 2 from (a).

c) Purple: Distances between active cells on Day 1 and their putatively matched cells on Day 2 (650 cells, n = 4 animals). Yellow: Distances between the same cells and their nearest neighbor within Day 1. Plot is cut off at 30μm.