Table 5.

Linkage disequilibrium between SNP marker pairs located on the same chromosome in faba bean

Chr	r2 mean	No. of sig. LD	Average of sig. LD	No. of non-sig LD	Average of non-sig. LD
Chr.1	0.0050	619	0.5823	1654607	0.0047
Chr.2	0.0082	225	0.5169	685336	0.0082
Chr.3	0.0055	232	0.4893	549520	0.0053
Chr.4	0.0058	185	0.4926	410888	0.0056
Chr.5	0.0054	117	0.4639	348265	0.0052
Chr.6	0.0059	141	0.4992	312700	0.0059

No. of sig. LD: number of marker pirs that were significant in LD at 0.01 Bonferroni correction

Average of sig. average of r² (LD) for significant markers

No. of non-sig LD: number of marker pairs that were non-significant in LD

Average of sig. average of r² (LD) for nonsignificant markers