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[Preprint]. 2024 Nov 11:2024.06.21.600153. Originally published 2024 Jun 23. [Version 2] doi: 10.1101/2024.06.21.600153

Table 2.

Repeat element sizes in P. dumerilii

RE type No. elements mean ± SD (bp) median (MAD) (bp) min - max (bp)
DNA 96,971 362.21 ± 517.76 200 (173.46) 9 – 11,327
LINE 150,127 497.39 ± 644.24 258 (272.80) 9 – 13,478
Low complexity 22,053 70.45 ± 118.06 43 (16.31) 9 – 4,301
LTR 394,173 374.79 ± 729.65 192 (173.46) 9 – 21,967
Rolling-circles 6,196 359.00 ± 900.17 162 (80.60) 9 – 9,295
Satellite 8,663 644.00 ± 1,295.79 226 (263.90) 9 – 75,744
Simple repeats 225,376 62.48 ± 76.84 42 (23.72) 4 – 7,786
SINE 24,734 153.45 ± 83.79 154 (74.13) 9 – 1,100
SINE? 71 102.30 ± 7.54 104 (0) 44 – 106
snRNA 73 158.95 ± 76.40 212 (23.72) 37 – 243
*tRNA 16,985 196.19 ± 242.55 150 (115.64) 9 – 8,727
Unclassified 1,797,443 272.49 ± 348.39 170 (140.85) 9 – 106,830