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. 2024 May 20;27(6):109961. doi: 10.1016/j.isci.2024.109961
REAGENT or RESOURCE SOURCE IDENTIFIER
Deposited data

deCODE (protein) Ferkingstad et al.14 https://www.decode.com/summarydata/
UKB-PPP (protein) Sun et al.15 https://metabolomips.org/ukbbpgwas/
ARIC (protein) Zhang et al.16 http://nilanjanchatterjeelab.org/pwas/
AGES (protein) Emilsson et al.17 https://pubmed.ncbi.nlm.nih.gov/30072576/
INTERVAL (protein) Sun et al.18 http://www.phpc.cam.ac.uk/ceu/proteins/
UK Biobank (TC) Feng et al.19 https://www.ukbiobank.ac.uk/
FinnGen R9 (TC) - https://finngen.gitbook.io/documentation/v/r9
Aleksandra et al. (TC) Aleksandra et al.20 https://www.ebi.ac.uk/gwas/
TCGA Sanchez-Vega et al.21 https://www.cancer.gov/ccg/research/genome-sequencing/tcga
GTEx Li et al.22 https://gtexportal.org/home/
GEO GSE33630; GSE60542 https://www.ncbi.nlm.nih.gov/geo/
Our Multi-omic Cohort This study supplemental information

Software and algorithms

R (v 4.3.0) - https://www.r-project.org
TwosampleMR (v 0.5.7) Hemani et al.67 https://www.mrbase.org
Coloc Giambartolomei et al.68 https://github.com/chr1swallace/coloc
ClusterProfiler Yu et al.69 https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html
STRING - https://cn.string-db.org/
PLINK (v 1.9) Purcell, S. et al.70 https://www.cog-genomics.org/plink/1.9
GeneMANIA Warde-Farley71 https://genemania.org/
SMR (v 1.3.1) Yang et al.72 https://yanglab.westlake.edu.cn/software/smr/#Overview
METAL Willer et al.73 https://genome.sph.umich.edu/wiki/METAL_Documentation