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. 2024 Jul 1;25:169. doi: 10.1186/s13059-024-03292-w

Table 1.

Single-cell datasets used in benchmarking

Dataset Tumor type # of cells Publication Data
Puram2017_HNSCCa HNSCC 5901 Puram et al. 2017 [25] [28]
Tirosh2016_SKCMa SKCM 4645 Tirosh et al. 2016 [29] [30]
Riemondy2022_MBa MB 39,946 Riemondy et al. 2022 [31] [32]
Jerby_Arnon2018_SKCMa SKCM 7186 Jerby-Arnon et al. 2018 [33] [34]
Lee2020_CRC CRC 21,657 Lee et al. 2020 [35] [36]
Qian2020_BRCA BRCA 16, 537 Qian et al. 2020 [37] [38]
Kim2020_LUAD LUAD 32,493 Kim et al. 2020 [39] [40]
Izar2020_OV OV 10,788 Izar et al. 2020 [41] [42]

HNSCC head and neck squamous cell carcinomas, SKCM skin cutaneous melanoma, MB medulloblastoma, CRC colorectal cancer, BRCA breast cancer, LUAD lung adenocarcinoma, OV ovarian cancer

ascRNA datasets marked with a superscript (a) are also utilized for simulation strategy comparisons