Table 3.

Genetic diversity indices of schistosome worms collected in cattle in three Malian slaughterhouses. Expected (He) and observed (Ho) heterozygosity, total number of alleles (A), allelic richness (Ar), and inbreeding coefficient (Fis) for each microsatellite locus and for each sampled site in Mali.

Slaughterhouse	Sh9	Sh3	C102	Sh1	Sh14	Sh6	C111	Sh7	Sh13	Sh4	Sh11	Sh15	Sh2	Sh5	Sh10	Sh12	Moy	Std
CBS (n = 55)
He exp	0.84	0.89	0.89	0.90	0.65	0.76	0.71	0.91	0.92	0.89	0.62	0.40	0.95	0.72	0.83	0.64	0.78	0.12
He Obs	0.40	0.71	0.24	0.67	0.67	0.33	0.44	0.66	0.90	0.87	0.48	0.32	0.96	0.29	0.71	0.58	0.57	0.22
A	13	16	13	13	8	8	8	20	17	18	10	7	22	7	12	10	12.63	3.88
Ar	10.83	13.94	12.42	11.84	6.51	7.06	6.99	16.11	15.64	14.87	8.37	5.74	19.55	6.83	10.55	7.69	10.93	3.48
Fis	0.51	0.20	0.73	0.25	−0.03	0.56	0.38	0.28	0.02	0.01	0.22	0.19	−0.02	0.60	0.14	0.09	0.26	0.19
SS (n = 42)
He exp	0.75	0.87	0.88	0.90	0.67	0.76	0.67	0.88	0.93	0.89	0.52	0.23	0.93	0.68	0.76	0.58	0.74	0.14
He Obs	0.46	0.82	0.30	0.89	0.59	0.40	0.54	0.54	0.91	0.88	0.50	0.21	0.94	0.31	0.83	0.63	0.60	0.24
A	9	17	14	12	5	7	7	12	17	15	4	3	16	6	8	3	9.69	4.40
Ar	8.02	15.25	14.00	11.73	4.99	6.80	6.49	11.49	16.49	14.09	3.91	2.69	15.67	5.83	7.87	3.00	9.27	4.23
Fis	0.38	0.06	0.69	0.01	0.12	0.47	0.19	0.39	0.02	0.01	0.05	0.08	−0.02	0.54	−0.11	−0.09	0.17	0.20
KS (n = 69)
He exp	0.56	0.83	0.69	0.16	0.36	0.27	0.22	0.21	0.94	0.91	0.81	0.19	0.82	0.28	0.68	0.83	0.55	0.27
He Obs	0.10	0.60	0.03	0.06	0.3	0.07	0.2	0.08	0.9	0.9	0.5	0.13	0.8	0.09	0.72	0.90	0.53	0.30
A	6	19	11	7	4	6	5	5	21	15	18	5	21	5	8	10	10.38	5.34
Ar	4.69	14.87	10.33	4.42	3.41	5.20	4.01	4.45	18.14	12.83	14.15	4.17	16.08	4.59	7.33	8.79	8.59	4.38
Fis	0.79	0.29	0.96	0.62	0.21	0.73	0.06	0.65	0.06	−0.02	0.33	0.27	0.01	0.69	−0.04	−0.09	0.34	0.30
Total (n = 166)
A	15	25	19	14	8	10	10	22	24	20	18	7	26	8	13	11	15.63	5.58
Ar	8.66	15.29	14.02	11.00	5.26	7.05	5.96	13.08	17.39	13.70	10.79	4.36	19.61	7.02	10.50	7.95	10.73	3.63