Table 2.
Up-regulated and down-regulated proteins in CDMgYE relative to CDMg.
| Accession number | Gene | Description | Expressiona ratio (CDMgYE/CDMg) | p value |
|---|---|---|---|---|
| Q03U32 | adhE | Aldehyde-alcohol dehydrogenase | ▲11.4 | 0.002 |
| Q03TF9 | cpnA_1 | Short-chain alcohol dehydrogenase | ▲7.7 | 0.000 |
| Q03TY7 | fabG | 3-oxoacyl-acyl carrier protein reductase | ▲6.6 | 0.002 |
| Q03PB4 | rtpR | Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase | ▲5.0 | 0.026 |
| Q03RY6 | pepA | Dipeptidase | ▲4.3 | 0.030 |
| Q03NK2 | gpmA1 | Phosphoglycerate mutase | ▲4.2 | 0.038 |
| Q03RM0 | adhL | Zn-dependent alcohol dehydrogenase | ▲3.8 | 0.014 |
| Q03QJ8 | Amidase family enzyme | ▲3.6 | 0.000 | |
| Q03U09 | gntK | Gluconate kinase | ▲3.2 | 0.047 |
| Q03NK6 | gldA | Glycerol dehydrogenase | ▲3.2 | 0.006 |
| Q03PK5 | budC | 3-oxoacyl-acyl carrier protein reductase | ▲3.2 | 0.014 |
| Q03U23 | ackA | Acetate kinase | ▲3.1 | 0.013 |
| Q03NB5 | lacM | Beta-galactosidase small subunit | ▲3.0 | 0.018 |
| Q03Q51 | deoB | Phosphopentomutase | ▲2.7 | 0.014 |
| Q03NI1 | dhaT | 1,3-propanediol dehydrogenase | ▲2.7 | 0.006 |
| Q03NB4 | lacL | Beta-galactosidase large subunit | ▲2.6 | 0.018 |
| Q03QA7 | dck | Deoxynucleoside kinase | ▲2.3 | 0.049 |
| Q03QU4 | dltA | D-alanine--D-alanyl carrier protein ligase | ▲2.1 | 0.027 |
| Q03R63 | ccpA | Transcriptional regulator, LacI family | ▲2.0 | 0.027 |
| Q03SQ9 | groEL | 60 kDa chaperonin | ▲2.0 | 0.028 |
| Q03PN8 | optB | ABC-type dipeptide/oligopeptide/nickel transport system, permease component | ▼2.0 | 0.008 |
| Q03SR9 | rsmI | Ribosomal RNA small subunit methyltransferase I | ▼2.1 | 0.046 |
| Q03RS4 | rsmB | tRNA and rRNA cytosine-C5-methylase | ▼2.1 | 0.000 |
| Q03T27 | pyrG | CTP synthase | ▼2.2 | 0.013 |
| Q03TP7 | ssuE | Predicted flavoprotein 1 | ▼2.2 | 0.048 |
| Q03SL0 | rnr | Ribonuclease R | ▼2.3 | 0.047 |
| Q03PN1 | glnq | ABC-type polar amino acid transport system, ATPase component | ▼2.3 | 0.037 |
| Q03TL7 | yrdn | 4-oxalocrotonate tautomerase | ▼2.5 | 0.000 |
| Q03PN3 | glnp | ABC-type amino acid transport system, permease component | ▼2.6 | 0.006 |
| Q03PN7 | optA | ABC-type oligopeptide transport system, periplasmic component | ▼2.6 | 0.005 |
| Q03NF4 | atoB | Acetyl-CoA acetyltransferase | ▼2.6 | 0.026 |
| Q03TC9 | rrf2 | Transcriptional regulator, BadM/Rrf2 family | ▼2.6 | 0.045 |
| Q03QY0 | glyA | Serine hydroxymethyltransferase | ▼2.7 | 0.002 |
| Q03SL6 | tpiA | Triosephosphate isomerase | ▼2.8 | 0.012 |
| Q03PN2 | glnH | ABC-type amino acid transport/signal transduction system, periplasmic component/domain | ▼2.9 | 0.011 |
| Q03QZ7 | cnpD | Membrane protease subunit, stomatin/prohibitin family | ▼3.0 | 0.032 |
| Q03PG5 | akr | Aldo/keto reductase of diketogulonate reductase family | ▼3.2 | 0.010 |
| Q03QJ0 | mnmA | tRNA-specific 2-thiouridylase | ▼3.2 | 0.021 |
| Q03T80 | gshR1 | Glutathione reductase | ▼3.3 | 0.010 |
| Q03P38 | akr | Aldo/keto reductase of diketogulonate reductase family | ▼3.6 | 0.010 |
| Q03NN9 | vanX | D-alanyl-D-alanine dipeptidase | ▼3.6 | 0.037 |
| Q03NW4 | gshR | Glutathione reductase | ▼3.7 | 0.007 |
| Q03PP0 | optD | ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component | ▼3.7 | 0.004 |
| Q03PN9 | optC | ABC-type dipeptide/oligopeptide/nickel transport system, permease component | ▼3.8 | 0.001 |
| Q03PP1 | optF | ABC-type oligopeptide transport system, ATPase component | ▼4.1 | 0.003 |
| Q03S70 | msrB | Peptide methionine sulfoxide reductase | ▼4.4 | 0.029 |
| Q03NN2 | dap2 | Dipeptidyl aminopeptidase/acylaminoacyl-peptidase | ▼4.7 | 0.020 |
| Q03TI3 | sad | NAD-dependent aldehyde dehydrogenase | ▼4.9 | 0.000 |
| Q03TX6 | lplA | Lipoate--protein ligase | ▼5.0 | 0.041 |
| Q03TX9 | oppF | ABC-type oligopeptide transport system, ATPase component | ▼6.4 | 0.021 |
| Q03SF6 | mscL | Large-conductance mechanosensitive channel | ▼6.7 | 0.013 |
| Q03QJ7 | yckB | ABC-type amino acid transport system, periplasmic component | ▼7.6 | 0.019 |
| Q03TX8 | oppD | ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component | ▼10.0 | 0.001 |
| Q03PN6 | optA2 | ABC-type oligopeptide transport system, periplasmic component | ▼10.4 | 0.000 |
| Q03TY2 | oppA | ABC-type oligopeptide transport system, periplasmic component | ▼11.6 | 0.002 |
| Q03NM1 | ywlg | UPF0340 protein | ▼21.1 | 0.000 |
a
Expression levels represent the up- (▴) or down- (▾) regulation of proteins by at least two-fold in the radio CDMgYE/CDM.