Table 5.
List of software for dynamic modeling.
| Software (implementation) | Application | References |
|---|---|---|
| Matlab | Programming language with integrated numerical methods | The MathWorks Inc., 2024 |
| Tellurium (Python) | Dynamical modeling of biological systems | Choi et al., 2018 |
| Copasi (desktop application) | Dynamical modeling of biological systems | Mendes et al., 2009 |
| PySCeS (Python) | Dynamical modeling of biological systems | Olivier et al., 2004 |
| MDSINE (Matlab) | Inference of gLV interaction parameters from time-series data | Bucci et al., 2016 |
| BEEM-static (Python) | Inference of gLV interaction parameters from steady-state data | Li et al., 2021 |
| miaSim (R) | Dynamic modeling of microbiomes | Gao et al., 2023 |
| Web-gLV (web application) | Inference of gLV interaction parameters from time-series data and simulation | Kuntal et al., 2019 |