TABLE 3.

Nucleotide and deduced amino acid sequence differences between the CTV genomic sequences from T30 and isolate T385, VT, T36, or SY568^a

T30 genome		T385 (Spain)			VT (Israel)			T36 (Florida)			SY568 (California)
Region	Size (nt)	Nucleotide I	Amino acid		Nucleotide I	Amino acid		Nucleotide I	Amino acid		Nucleotide I	Amino acid
			S	I		S	I		S	I		S	I
5′ NTR	108	96.3			70.2			41.1			64.2
ORF 1a	9,348	99.2	99.6	99.1	89.6	93.8	89.0	72.4	88.7	70.1	90.7	96.0	92.0
RdRp	1,434	99.5	100	99.8	90.0	96.6	94.8	79.4	95.2	91.0	91.4	96.9	96.4
p33	912	99.2	99.3	99.3	84.6	90.5	85.2	84.1	92.4	86.1	99.4	99.7	99.3
p6	156	100	100	100	90.9	98.1	92.3	88.4	94.2	92.3	100	100	100
p65	1,785	99.2	99.3	98.8	87.3	93.9	90.9	93.7	97.1	95.3	99.6	99.5	99.2
p61	1,608	99.4	99.1	98.7	87.9	94.6	90.7	94.8	97.4	95.3	99.4	99.3	99.0
p27 (CPm)	730	99.3	99.6	99.2	88.7	95.4	93.3	93.6	97.5	96.3	99.1	97.9	97.1
p25 (CP)	672	99.6	99.6	99.1	92.4	97.8	94.6	93.0	98.7	96.0	93.1	98.2	96.0
p18	504	99.4	99.4	98.8	93.0	94.6	92.2	95.2	97.0	95.2	93.1	96.4	95.2
p13	360	99.4	99.1	99.1	91.1	96.6	94.1	91.7	95.8	90.6	95.8	90.8
p20	549	99.6	100	100	90.3	96.2	93.4	88.8	96.7	93.4	93.1	98.9	97.7
p23	630	98.7	98.6	98.1	89.6	93.3	89.0	90.9	95.2	91.4	89.7	95.2	91.4
3′ NTR	274	99.6			99.0			97.0			97.8

^aI, percent identity; S, percent similarity. CP, major coat protein; CPm, minor coat protein. See text for explanation of boldface, italic, and underlined values.