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. Author manuscript; available in PMC: 2025 Jul 3.
Published in final edited form as: Neuron. 2024 Apr 30;112(13):2112–2129.e4. doi: 10.1016/j.neuron.2024.04.009
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Bacterial and virus strains
E. Coli: OP50 Caenorhabditis Genetics Center OP50
E. Coli: HT115 Caenorhabditis Genetics Center HT115
Biological samples
Chemicals, peptides, and recombinant proteins
2-Butanone, 99+%, extra pure Acros Organics Cat# 149670250
Critical commercial assays
Deposited data
Human brain bulk RNA sequencing data (Wang et al., 2018) Synapse: syn3159438; https://www.synapse.org/#!Synapse:syn3159438
Human brain single-nucleus RNA sequencing data (Cain et al., 2023) Synapse: syn16780177; https://www.synapse.org/#!Synapse:syn16780177
Experimental models: Cell lines
Experimental models: Organisms/strains
C. elegans strain LC108: vIs69 [pCFJ90(Pmyo-2::mCherry + Punc-119::sid-1)] Caenorhabditis Genetics Center LC108
Oligonucleotides
Recombinant DNA
Plasmid: pL4440 RNAi control Ahringer RNAi library N/A
Plasmid: pL4440-vha-10 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-jnk-1 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-aps-2 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-zyg-9 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-F54A3.2 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-cmd-1 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-apl-1 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-Y62E10A.2 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-ephx-1 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-misc-1 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-pho-5 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-pho-14 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-mtch-1 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-nuo-2 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-rpt-5 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-amph-1 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-unc-11 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-rpy-1 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-nmr-2 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-gpb-1 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-gtl-2 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-lad-2 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-T09B9.3 RNAi Ahringer RNAi library N/A
Plasmid: pL4440-nhr-23 RNAi Ahringer RNAi library N/A
Software and algorithms
WGCNA v1.70.3 (Langfelder and Horvath, 2008) https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/
R version 4.0.5 R Core Team https://www.R-project.org/
Rstudio v1.4 R Studio https://rstudio.com/products/rstudio/
Seurat v4.1.0 (Hao et al., 2021) https://satijalab.org/seurat/index.html/
Prism 8 Graphpad Prism https://www.graphpad.com/scientific-software/prism/
Other