Table 2.
Read mapping statistics of whole metagenome shotgun sequencing for all patient samples (n=23) in comparison to synthetic control samples.
| Study ID | Patient | Group | Sample Type | total reads | total reads (%) | Unclassified reads (%) | Human reads (%) | Non-human reads (%) |
|---|---|---|---|---|---|---|---|---|
| A0006 | 3 | patient | Blood | 52,002,868 | 100.00% | 5.64% | 93.97% | 0.39% |
| A0007 | 3 | patient | BM | 33,779,766 | 100.00% | 6.32% | 93.29% | 0.39% |
| A0008 | 4 | patient | Blood | 32,735,894 | 100.00% | 4.96% | 94.67% | 0.37% |
| A0009 | 4 | patient | BM | 32,188,415 | 100.00% | 4.67% | 94.98% | 0.36% |
| A0014 | 7 | patient | Blood | 38,734,281 | 100.00% | 5.11% | 94.52% | 0.38% |
| A0015 | 7 | patient | BM | 69,313,588 | 100.00% | 5.21% | 94.42% | 0.38% |
| A0020 | 10 | patient | Blood | 40,929,261 | 100.00% | 5.59% | 94.03% | 0.38% |
| A0021 | 10 | patient | BM | 34,978,231 | 100.00% | 5.23% | 94.41% | 0.36% |
| A0022 | 11 | patient | Blood | 51,991,969 | 100.00% | 5.05% | 94.58% | 0.37% |
| A0023 | 11 | patient | BM | 52,900,092 | 100.00% | 5.13% | 94.50% | 0.37% |
| C0005 | 14 | patient | Blood | 33,459,164 | 100.00% | 4.61% | 95.01% | 0.37% |
| C0006 | 14 | patient | BM | 37,141,333 | 100.00% | 4.92% | 94.72% | 0.36% |
| Mean (patients) | 42,512,905 | 5.20% | 94.43% | 0.37% | ||||
| A0004 | 2 | control | Blood | 26,036,123 | 100.00% | 5.21% | 94.41% | 0.39% |
| A0005 | 2 | control | BM | 26,543,185 | 100.00% | 5.04% | 94.61% | 0.35% |
| A0010 | 5 | control | Blood | 68,049,522 | 100.00% | 5.50% | 94.08% | 0.42% |
| A0011 | 5 | control | BM | 40,976,925 | 100.00% | 7.14% | 92.43% | 0.43% |
| A0012 | 6 | control | Blood | 31,826,897 | 100.00% | 4.47% | 95.13% | 0.40% |
| A0016 | 8 | control | Blood | 35,040,574 | 100.00% | 5.06% | 94.57% | 0.37% |
| A0017 | 8 | control | BM | 32,807,936 | 100.00% | 6.06% | 93.51% | 0.43% |
| A0018 | 8 | control | Blood | 29,234,374 | 100.00% | 5.09% | 94.55% | 0.36% |
| A0019 | 8 | control | BM | 33,102,958 | 100.00% | 4.98% | 94.65% | 0.36% |
| C0003 | 13 | control | Blood | 55,440,951 | 100.00% | 5.64% | 93.94% | 0.41% |
| C0004 | 13 | control | BM | 46,684,511 | 100.00% | 5.89% | 93.69% | 0.42% |
| Mean (controls) | 38,703,996 | 5.46% | 94.14% | 0.39% | ||||
| PK control sample | seq_control | seq_control | 34,385,397 | 100.00% | 5.15% | 94.43% | 0.42% | |
| PK control sample | seq_control | seq_control | 27,760,992 | 100.00% | 5.45% | 94.12% | 0.43% | |
| PK control sample | seq_control | seq_control | 36,634,920 | 100.00% | 5.40% | 94.18% | 0.42% | |
| PK control sample | seq_control | seq_control | 35,377,025 | 100.00% | 5.78% | 93.77% | 0.45% | |
| PK control sample | seq_control | seq_control | 25,294,988 | 100.00% | 5.26% | 94.25% | 0.49% | |
| PK control sample | seq_control | seq_control | 31,521,209 | 100.00% | 4.49% | 95.09% | 0.42% | |
| Mean (synthetic controls) | 31,829,089 | 5.26% | 94.31% | 0.44% | ||||
BM, bone marrow.