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. 2024 Jun 4;10(12):e32389. doi: 10.1016/j.heliyon.2024.e32389

Table 1.

List of reverse and forward primers for the genes used in the study.

Gene Primers 5’ → 3′ Function
aae-F
aae-R
5′-GAGGAGGATTTTAAAGTGC-3′
5′-AACATGACCATAGTAACC-3′
Surface-associated protein with bacteriolytic and adhesive properties autolysin/adhesins potentially involved in colonization.
aap-F
aap-R
5′-GCACCAGCTGTTGTTGTACC-3′
5′-GCATGCCTGCTGATAGTTCA-3′
Accumulation-associated protein (AAP) is involved in protein-associated biofilm formation and accumulation
atlE-F
atlE-R
5′- TGT CCT GCT TTC ACG TAT GA -3′
5′- TTTACGTGGTTAAGGTTTCT-3′
Autolysin/adhesins involved in primary adherence and attachment
ica ADBC-F
icaADBC-R
5′-TTATCAATG CCGCAGTTGTC-3′
5′- GTTTAACGCGAGTGCGCTAT-3′
Gene cluster encoding the production of polysaccharide intercellular adhesin (PIA), which mediates the intercellular adherence of bacteria and the accumulation of multilayer biofilm
agrA-F
agrA-R
5′- AAGCGGGGAAGTAATTCAGT-5′-ATCGTGTCGAACTACTTGCA-3' S. epidermidis accessory gene regulator system.
Enhanced agr activity causes upregulation of many exoproteins, such as the d-toxin, promoting biofilm detachment and downregulation of surface-associated proteins.
agrB-F
agrB-R
5′-TTCGTTTAGGGATGCAGGTA-3′
5′-ATCCTCTGTACGTGTGCCAT-3′
agrC-F
agrC-R
5′-CATCAATATCGCATTCATCG-3′
5′-ATTTCCACTATTAGCGCCAA-3′
agrD-F
agrD-R
5′CACTACAATCTTGGAATTTATTGGT-3′
5′-AACTGCTTGGTCTTCATGGTC-3′
luxS-F
luxS-R
5′-ACACCGCTGCGATACTGCCGCCGGT-3′
5′-AGCCGGTGCGGCAGCCAAACGGTGA-3′
Quorum sensing system
bhp-F
bhp-R
5′-TCCTCAGTAGCAGCAAGCAA-3′
5′-GAAGTAAACCATTCAGATAGCGACA-3′
Bap homologue protein involved in accumulation in a PIA independent biofilm
16S rRNA-F
16S rRNA-R
5′- GGGCTACACACGTGCTACAA-3′
5′-GTACAAGACCCGGGAACGTA-3′
16 S ribosomal RNA/housekeeping genes