Table 1.
Gene | Primers 5’ → 3′ | Function |
---|---|---|
aae-F aae-R |
5′-GAGGAGGATTTTAAAGTGC-3′ 5′-AACATGACCATAGTAACC-3′ |
Surface-associated protein with bacteriolytic and adhesive properties autolysin/adhesins potentially involved in colonization. |
aap-F aap-R |
5′-GCACCAGCTGTTGTTGTACC-3′ 5′-GCATGCCTGCTGATAGTTCA-3′ |
Accumulation-associated protein (AAP) is involved in protein-associated biofilm formation and accumulation |
atlE-F atlE-R |
5′- TGT CCT GCT TTC ACG TAT GA -3′ 5′- TTTACGTGGTTAAGGTTTCT-3′ |
Autolysin/adhesins involved in primary adherence and attachment |
ica ADBC-F icaADBC-R |
5′-TTATCAATG CCGCAGTTGTC-3′ 5′- GTTTAACGCGAGTGCGCTAT-3′ |
Gene cluster encoding the production of polysaccharide intercellular adhesin (PIA), which mediates the intercellular adherence of bacteria and the accumulation of multilayer biofilm |
agrA-F agrA-R |
5′- AAGCGGGGAAGTAATTCAGT-5′-ATCGTGTCGAACTACTTGCA-3' |
S. epidermidis accessory gene regulator system. Enhanced agr activity causes upregulation of many exoproteins, such as the d-toxin, promoting biofilm detachment and downregulation of surface-associated proteins. |
agrB-F agrB-R |
5′-TTCGTTTAGGGATGCAGGTA-3′ 5′-ATCCTCTGTACGTGTGCCAT-3′ |
|
agrC-F agrC-R |
5′-CATCAATATCGCATTCATCG-3′ 5′-ATTTCCACTATTAGCGCCAA-3′ |
|
agrD-F agrD-R |
5′CACTACAATCTTGGAATTTATTGGT-3′ 5′-AACTGCTTGGTCTTCATGGTC-3′ |
|
luxS-F luxS-R |
5′-ACACCGCTGCGATACTGCCGCCGGT-3′ 5′-AGCCGGTGCGGCAGCCAAACGGTGA-3′ |
Quorum sensing system |
bhp-F bhp-R |
5′-TCCTCAGTAGCAGCAAGCAA-3′ 5′-GAAGTAAACCATTCAGATAGCGACA-3′ |
Bap homologue protein involved in accumulation in a PIA independent biofilm |
16S rRNA-F 16S rRNA-R |
5′- GGGCTACACACGTGCTACAA-3′ 5′-GTACAAGACCCGGGAACGTA-3′ |
16 S ribosomal RNA/housekeeping genes |