TABLE 1.
UCSC Genome Browser DNase clusters from 125 cell types in ENCODE (v3) detail
| +15.6 kb CREa Cell Type | +19.6 kb CREb Cell Type | +21.5 kb CREc Cell Type | +22.6 kb CREd Cell Type | |
|---|---|---|---|---|
| HRCEpiC | Jurkat | HRPEpiC | HEEpiC | H7-hESC |
| RPTEC | FibroP | H7-hESC | SAEC | Melano |
| HAEpiC | Huh-7.5 | HEEpiC | PrEC | |
| SAEC | H9ES | HRCEpiC | ||
| Caco-2 | HBMEC | pHTE | ||
| HEEpiC | HPDE6-E6E7 | HPDE6-E6E7 | ||
| H7-hESC | HRPEpiC | NHEK | ||
| HRE | Osteobl | HRE | ||
| PrEC | HCF | RPTEC | ||
| HeLa-S3 | MCF-7 | RWPE1 | ||
| HVMF | Melano | HMEC | ||
| HCPEpiC | HA-sp | LNCaP | ||
| Huh-7 | HCFaa | |||
| HCM | HIPEpiC | |||
| HPAF | HMEC | |||
| pHTE | WI-38 | |||
| A549 | H1-hESC | |||
| HeLa-S3 | HFF-Myc |
Note: Bold—Cell types with +21.5 kb open chromatin that overlap with those having open chromatin at +15.6 kb, +19.6 kb, or +22.6 kb.
Abbreviation: CRE, cis-regulatory element.
a
+15.6 kb open chromatin: hg19 chr7:117322806–117323495.
b
+19.6 kb open chromatin: hg19 chr7:117326361–117326630.
c
+21.5 kb open chromatin: hg19 chr7:117328266–117328570.
d
+22.6 kb open chromatin: hg19 chr7:117329486–117329635 and chr7:117329641–117329790.